Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9593 | 3' | -50.5 | NC_002577.1 | + | 122676 | 0.7 | 0.938968 |
Target: 5'- gGGUGGAAGGGGgauggguaccgAGGGCAucgAACUGGc-- -3' miRNA: 3'- -CUACCUUCCCU-----------UUCCGU---UUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 1540 | 0.7 | 0.938968 |
Target: 5'- aAUGGggGGGggGGGgGGAgaGGGu- -3' miRNA: 3'- cUACCuuCCCuuUCCgUUUggCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 139019 | 0.72 | 0.868166 |
Target: 5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3' miRNA: 3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127350 | 0.76 | 0.665607 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 162973 | 0.67 | 0.984081 |
Target: 5'- gGggGGggGGGggGGGCGcgacuccaagcguuaGACCGc--- -3' miRNA: 3'- -CuaCCuuCCCuuUCCGU---------------UUGGCcuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127406 | 0.69 | 0.964333 |
Target: 5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3' miRNA: 3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 140395 | 0.7 | 0.922204 |
Target: 5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3' miRNA: 3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127311 | 0.77 | 0.644105 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 128536 | 0.69 | 0.956885 |
Target: 5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3' miRNA: 3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 129737 | 0.79 | 0.516634 |
Target: 5'- uGUGGggGGGggGGGCGGGaaGGAu- -3' miRNA: 3'- cUACCuuCCCuuUCCGUUUggCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 11711 | 0.7 | 0.93331 |
Target: 5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3' miRNA: 3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 140507 | 0.7 | 0.938968 |
Target: 5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3' miRNA: 3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127465 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 126965 | 0.72 | 0.87587 |
Target: 5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3' miRNA: 3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 57184 | 0.74 | 0.759683 |
Target: 5'- --cGGGAGGGAGuGGGUucGCCGGGAc -3' miRNA: 3'- cuaCCUUCCCUU-UCCGuuUGGCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 154861 | 0.76 | 0.676318 |
Target: 5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3' miRNA: 3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 136702 | 0.66 | 0.992388 |
Target: 5'- -uUGGgcGGGAAAGGC---CCGGc-- -3' miRNA: 3'- cuACCuuCCCUUUCCGuuuGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 7582 | 0.67 | 0.985024 |
Target: 5'- gGggGGggGGGggGGGgGAuccgaaccgugcgGCgGGAAGg -3' miRNA: 3'- -CuaCCuuCCCuuUCCgUU-------------UGgCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 142025 | 0.68 | 0.97083 |
Target: 5'- uGggGGggGGGggGGGUGgugguGGuuGGAGAc -3' miRNA: 3'- -CuaCCuuCCCuuUCCGU-----UUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 121998 | 0.68 | 0.967697 |
Target: 5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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