miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 121903 0.7 0.93331
Target:  5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3'
miRNA:   3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 11615 0.68 0.967697
Target:  5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3'
miRNA:   3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 6208 0.69 0.964333
Target:  5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 5078 0.69 0.956885
Target:  5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3'
miRNA:   3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 124100 0.69 0.948441
Target:  5'- uGggGGggGGGggGGGgAGGgaGGGAAa -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUUggCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 10938 0.7 0.938968
Target:  5'- gGGUGGAAGGGGgauggguaccgAGGGCAucgAACUGGc-- -3'
miRNA:   3'- -CUACCUUCCCU-----------UUCCGU---UUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 132074 0.7 0.938968
Target:  5'- aAUGGggGGGggGGGgGGAgaGGGu- -3'
miRNA:   3'- cUACCuuCCCuuUCCgUUUggCCUuu -5'
9593 3' -50.5 NC_002577.1 + 156831 0.7 0.938968
Target:  5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3'
miRNA:   3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 16505 0.7 0.933838
Target:  5'- aGAUGaGGGcGGggGGGUuGGCCGGGAGg -3'
miRNA:   3'- -CUACcUUC-CCuuUCCGuUUGGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 156613 0.68 0.97083
Target:  5'- gGggGGguGGGggGGGCAcGCCcgaGGGAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUuUGG---CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 7336 0.68 0.97083
Target:  5'- uAUGGggGGGGGAGGgGGGggGGggGg -3'
miRNA:   3'- cUACCuuCCCUUUCCgUUUggCCuuU- -5'
9593 3' -50.5 NC_002577.1 + 9629 0.68 0.978916
Target:  5'- --cGGggGGGAGGGGaaaAGAcguuugcguuauCCGGAAu -3'
miRNA:   3'- cuaCCuuCCCUUUCCg--UUU------------GGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 8495 0.66 0.993416
Target:  5'- gGcgGGggGGGggGGGgGGugUGuGAGu -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUugGC-CUUu -5'
9593 3' -50.5 NC_002577.1 + 122568 0.66 0.993416
Target:  5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3'
miRNA:   3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 160636 0.66 0.992388
Target:  5'- -uUGGgcGGGAAAGGC---CCGGc-- -3'
miRNA:   3'- cuACCuuCCCUUUCCGuuuGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 6081 0.66 0.989954
Target:  5'- --gGGGAGGGggGGGgAAGggaGGAAGa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 155313 0.66 0.989954
Target:  5'- uGggGGggGGGggGGGUGGugguGgUGGAGAc -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUU----UgGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 126032 0.67 0.985024
Target:  5'- gGggGGggGGGggGGGgGAuccgaaccgugcgGCgGGAAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUU-------------UGgCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 134354 0.67 0.982686
Target:  5'- gGggGGggGGGggGGGCGcgacucaagcguuaGACCGc--- -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGU--------------UUGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 137244 0.67 0.9812
Target:  5'- uGUGGGuc-GAGGGGCGAACCGGu-- -3'
miRNA:   3'- cUACCUuccCUUUCCGUUUGGCCuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.