Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9593 | 3' | -50.5 | NC_002577.1 | + | 126751 | 1.07 | 0.011297 |
Target: 5'- cGAUGGAAGGGAAAGGCAAACCGGAAAa -3' miRNA: 3'- -CUACCUUCCCUUUCCGUUUGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6862 | 1.07 | 0.011297 |
Target: 5'- cGAUGGAAGGGAAAGGCAAACCGGAAAa -3' miRNA: 3'- -CUACCUUCCCUUUCCGUUUGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 161817 | 0.82 | 0.382736 |
Target: 5'- -cUGGAAGGGGAcGGCGGuccGCCGGAGAc -3' miRNA: 3'- cuACCUUCCCUUuCCGUU---UGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 135520 | 0.82 | 0.382736 |
Target: 5'- -cUGGAAGGGGAcGGCGGuccGCCGGAGAc -3' miRNA: 3'- cuACCUUCCCUUuCCGUU---UGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 124518 | 0.8 | 0.456558 |
Target: 5'- uGUGcGAGGGGggGGGCGacgggcGACCGGGAAu -3' miRNA: 3'- cUAC-CUUCCCuuUCCGU------UUGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 9096 | 0.8 | 0.456558 |
Target: 5'- uGUGcGAGGGGggGGGCGacgggcGACCGGGAAu -3' miRNA: 3'- cUAC-CUUCCCuuUCCGU------UUGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 129737 | 0.79 | 0.516634 |
Target: 5'- uGUGGggGGGggGGGCGGGaaGGAu- -3' miRNA: 3'- cUACCuuCCCuuUCCGUUUggCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6303 | 0.77 | 0.644105 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127311 | 0.77 | 0.644105 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6264 | 0.76 | 0.665607 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 154861 | 0.76 | 0.676318 |
Target: 5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3' miRNA: 3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 142477 | 0.76 | 0.676318 |
Target: 5'- gGggGGggGGGggGGcGCGggUCGGGGAa -3' miRNA: 3'- -CuaCCuuCCCuuUC-CGUuuGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127350 | 0.76 | 0.665607 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 157949 | 0.75 | 0.748572 |
Target: 5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3' miRNA: 3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 130911 | 0.75 | 0.739378 |
Target: 5'- --gGGggGGGggGGGgGGugUGGAAGg -3' miRNA: 3'- cuaCCuuCCCuuUCCgUUugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 139388 | 0.75 | 0.748572 |
Target: 5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3' miRNA: 3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 3874 | 0.75 | 0.739378 |
Target: 5'- --gGGggGGGggGGGCGGGaaGGAu- -3' miRNA: 3'- cuaCCuuCCCuuUCCGUUUggCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 2702 | 0.75 | 0.739378 |
Target: 5'- --gGGggGGGggGGGgGGugUGGAAGg -3' miRNA: 3'- cuaCCuuCCCuuUCCgUUugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 131978 | 0.74 | 0.779488 |
Target: 5'- gGggGGggGGGGAGGGgGGAUgGGAAc -3' miRNA: 3'- -CuaCCuuCCCUUUCCgUUUGgCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 57184 | 0.74 | 0.759683 |
Target: 5'- --cGGGAGGGAGuGGGUucGCCGGGAc -3' miRNA: 3'- cuaCCUUCCCUU-UCCGuuUGGCCUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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