miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 3' -60.6 NC_002577.1 + 109512 0.66 0.762341
Target:  5'- cCCUCCACuuaGCUUCCGCGgACGCUGc -3'
miRNA:   3'- uGGGGGUGug-UGGGGGUGUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 131435 0.66 0.753139
Target:  5'- uACCCCUACAggccuaACCCCgACAacgACACUa -3'
miRNA:   3'- -UGGGGGUGUg-----UGGGGgUGUg--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 103527 0.66 0.753139
Target:  5'- uCCCCUagcgGCGCGCCCCCGguacCAUAagaaGCUGa -3'
miRNA:   3'- uGGGGG----UGUGUGGGGGU----GUGUg---UGGC- -5'
9594 3' -60.6 NC_002577.1 + 45626 0.66 0.753139
Target:  5'- aACCCgCGCACAUCuCCUugACAUccagGCCc -3'
miRNA:   3'- -UGGGgGUGUGUGG-GGGugUGUG----UGGc -5'
9594 3' -60.6 NC_002577.1 + 2178 0.66 0.753139
Target:  5'- uACCCCUACAggccuaACCCCgACAacgACACUa -3'
miRNA:   3'- -UGGGGGUGUg-----UGGGGgUGUg--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 136865 0.66 0.752213
Target:  5'- aGCgCCCACguugcuuuccgugGCGCgaCCCCGCGCGCAUUa -3'
miRNA:   3'- -UGgGGGUG-------------UGUG--GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 160473 0.66 0.752213
Target:  5'- aGCgCCCACguugcuuuccgugGCGCgaCCCCGCGCGCAUUa -3'
miRNA:   3'- -UGgGGGUG-------------UGUG--GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 1369 0.66 0.743838
Target:  5'- cACCCUCGCcgGCCCCgACccucaauccgcgGCACGCCc -3'
miRNA:   3'- -UGGGGGUGugUGGGGgUG------------UGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 51327 0.66 0.743838
Target:  5'- uGCCCCgagCACGgACCCCgGCACGUGCUu -3'
miRNA:   3'- -UGGGG---GUGUgUGGGGgUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 132245 0.66 0.743838
Target:  5'- cACCCUCGCcgGCCCCgACccucaauccgcgGCACGCCc -3'
miRNA:   3'- -UGGGGGUGugUGGGGgUG------------UGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 141948 0.66 0.724972
Target:  5'- uGCCCCCGgGgAgCCUaguaGCGCugACCGc -3'
miRNA:   3'- -UGGGGGUgUgUgGGGg---UGUGugUGGC- -5'
9594 3' -60.6 NC_002577.1 + 122852 0.66 0.724972
Target:  5'- uCCCCCuucCACccgucggcgACCCCCGCgaACGCgaGCCGu -3'
miRNA:   3'- uGGGGGu--GUG---------UGGGGGUG--UGUG--UGGC- -5'
9594 3' -60.6 NC_002577.1 + 155390 0.66 0.724972
Target:  5'- uGCCCCCGgGgAgCCUaguaGCGCugACCGc -3'
miRNA:   3'- -UGGGGGUgUgUgGGGg---UGUGugUGGC- -5'
9594 3' -60.6 NC_002577.1 + 27772 0.66 0.724972
Target:  5'- aACUCCCGuCACAgaUCCgGCACugGCCa -3'
miRNA:   3'- -UGGGGGU-GUGUg-GGGgUGUGugUGGc -5'
9594 3' -60.6 NC_002577.1 + 10762 0.66 0.724972
Target:  5'- uCCCCCuucCACccgucggcgACCCCCGCgaACGCgaGCCGu -3'
miRNA:   3'- uGGGGGu--GUG---------UGGGGGUG--UGUG--UGGC- -5'
9594 3' -60.6 NC_002577.1 + 101491 0.66 0.715424
Target:  5'- cGCCCCCGuC-CuCUaCCCACGCACGCUu -3'
miRNA:   3'- -UGGGGGU-GuGuGG-GGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 140810 0.66 0.70581
Target:  5'- cCCCCUACACcaccuccccuuaGCCCCCcuccuccuACGC-CACCc -3'
miRNA:   3'- uGGGGGUGUG------------UGGGGG--------UGUGuGUGGc -5'
9594 3' -60.6 NC_002577.1 + 156528 0.66 0.70581
Target:  5'- cCCCCUACACcaccuccccuuaGCCCCCcuccuccuACGC-CACCc -3'
miRNA:   3'- uGGGGGUGUG------------UGGGGG--------UGUGuGUGGc -5'
9594 3' -60.6 NC_002577.1 + 98347 0.66 0.70581
Target:  5'- aACCCCgAUcuagcuACACCCCCGguCAUugCu -3'
miRNA:   3'- -UGGGGgUG------UGUGGGGGUguGUGugGc -5'
9594 3' -60.6 NC_002577.1 + 122574 0.67 0.693226
Target:  5'- cGCCCCCgugggaggggggcgGCGuuucuaGCCCCCGgCGCGgGCCGc -3'
miRNA:   3'- -UGGGGG--------------UGUg-----UGGGGGU-GUGUgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.