miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 3' -60.6 NC_002577.1 + 124973 1.07 0.001723
Target:  5'- cACCCCCACACACCCCCACACACACCGc -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 8640 1.07 0.001723
Target:  5'- cACCCCCACACACCCCCACACACACCGc -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 141515 0.8 0.127128
Target:  5'- uGCCCCCcgcccaACACcaccaccaccccGCCCCUACACACACCa -3'
miRNA:   3'- -UGGGGG------UGUG------------UGGGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 155823 0.8 0.127128
Target:  5'- uGCCCCCcgcccaACACcaccaccaccccGCCCCUACACACACCa -3'
miRNA:   3'- -UGGGGG------UGUG------------UGGGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 124936 0.78 0.170995
Target:  5'- uCCCggCCGCGCGCacaCCCACACACACCc -3'
miRNA:   3'- uGGG--GGUGUGUGg--GGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 8677 0.78 0.170995
Target:  5'- uCCCggCCGCGCGCacaCCCACACACACCc -3'
miRNA:   3'- uGGG--GGUGUGUGg--GGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 154782 0.74 0.286889
Target:  5'- gGCCCCCcCu--CCCCCACGCAgCGCCu -3'
miRNA:   3'- -UGGGGGuGuguGGGGGUGUGU-GUGGc -5'
9594 3' -60.6 NC_002577.1 + 142554 0.74 0.286889
Target:  5'- gGCCCCCcCu--CCCCCACGCAgCGCCu -3'
miRNA:   3'- -UGGGGGuGuguGGGGGUGUGU-GUGGc -5'
9594 3' -60.6 NC_002577.1 + 140710 0.74 0.293407
Target:  5'- cACCUCCGCAUACCCCCcCucCGCACgGu -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGuGu-GUGUGgC- -5'
9594 3' -60.6 NC_002577.1 + 8829 0.74 0.293407
Target:  5'- uCCCCCAacuaAC-CCUUCGCGCGCACCGc -3'
miRNA:   3'- uGGGGGUg---UGuGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 156628 0.74 0.293407
Target:  5'- cACCUCCGCAUACCCCCcCucCGCACgGu -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGuGu-GUGUGgC- -5'
9594 3' -60.6 NC_002577.1 + 124785 0.74 0.293407
Target:  5'- uCCCCCAacuaAC-CCUUCGCGCGCACCGc -3'
miRNA:   3'- uGGGGGUg---UGuGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 11652 0.74 0.32063
Target:  5'- gACCCgaccgcugauCCGCGCGCCCCUcCGgACGCCGa -3'
miRNA:   3'- -UGGG----------GGUGUGUGGGGGuGUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 121962 0.74 0.32063
Target:  5'- gACCCgaccgcugauCCGCGCGCCCCUcCGgACGCCGa -3'
miRNA:   3'- -UGGG----------GGUGUGUGGGGGuGUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 128777 0.73 0.345224
Target:  5'- uACUCCCguGCACACCgCCgaggggggacacggcGCGCGCGCCGa -3'
miRNA:   3'- -UGGGGG--UGUGUGGgGG---------------UGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 4837 0.73 0.345224
Target:  5'- uACUCCCguGCACACCgCCgaggggggacacggcGCGCGCGCCGa -3'
miRNA:   3'- -UGGGGG--UGUGUGGgGG---------------UGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 11446 0.72 0.413273
Target:  5'- uCCCCCACACauccucccGCCCCCACA---ACCu -3'
miRNA:   3'- uGGGGGUGUG--------UGGGGGUGUgugUGGc -5'
9594 3' -60.6 NC_002577.1 + 122168 0.72 0.413273
Target:  5'- uCCCCCACACauccucccGCCCCCACAaccuccuCcCCGg -3'
miRNA:   3'- uGGGGGUGUG--------UGGGGGUGUgu-----GuGGC- -5'
9594 3' -60.6 NC_002577.1 + 90039 0.71 0.427673
Target:  5'- gACCUCCACAgACCCgCCACAacguucagacuucuuCGCCGg -3'
miRNA:   3'- -UGGGGGUGUgUGGG-GGUGUgu-------------GUGGC- -5'
9594 3' -60.6 NC_002577.1 + 159279 0.71 0.438882
Target:  5'- uUCCCCAUuu-CCUCCACGUACACCGg -3'
miRNA:   3'- uGGGGGUGuguGGGGGUGUGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.