miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 3' -60.6 NC_002577.1 + 136916 0.71 0.438882
Target:  5'- gGCCCCC-CACcCCCCCugaagcgugcCGCgACGCCGg -3'
miRNA:   3'- -UGGGGGuGUGuGGGGGu---------GUG-UGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 142393 0.71 0.438882
Target:  5'- -gCCCUACuuGCCCCUA-ACGCACCGg -3'
miRNA:   3'- ugGGGGUGugUGGGGGUgUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 159279 0.71 0.438882
Target:  5'- uUCCCCAUuu-CCUCCACGUACACCGg -3'
miRNA:   3'- uGGGGGUGuguGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 160422 0.71 0.438882
Target:  5'- gGCCCCC-CACcCCCCCugaagcgugcCGCgACGCCGg -3'
miRNA:   3'- -UGGGGGuGUGuGGGGGu---------GUG-UGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 138059 0.71 0.438882
Target:  5'- uUCCCCAUuu-CCUCCACGUACACCGg -3'
miRNA:   3'- uGGGGGUGuguGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 139755 0.71 0.447618
Target:  5'- -gCUCCGCGCACCCCgACGUACGCUu -3'
miRNA:   3'- ugGGGGUGUGUGGGGgUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 157583 0.71 0.447618
Target:  5'- -gCUCCGCGCACCCCgACGUACGCUu -3'
miRNA:   3'- ugGGGGUGUGUGGGGgUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 159918 0.71 0.45645
Target:  5'- gACCCCCuCGCACUCCaGCGCGCAagCGu -3'
miRNA:   3'- -UGGGGGuGUGUGGGGgUGUGUGUg-GC- -5'
9594 3' -60.6 NC_002577.1 + 137420 0.71 0.45645
Target:  5'- gACCCCCuCGCACUCCaGCGCGCAagCGu -3'
miRNA:   3'- -UGGGGGuGUGUGGGGgUGUGUGUg-GC- -5'
9594 3' -60.6 NC_002577.1 + 158220 0.7 0.501937
Target:  5'- gACgCCCCACgGCucuCgUCCCGCACGCGCCu -3'
miRNA:   3'- -UG-GGGGUG-UGu--G-GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 139118 0.7 0.501937
Target:  5'- gACgCCCCACgGCucuCgUCCCGCACGCGCCu -3'
miRNA:   3'- -UG-GGGGUG-UGu--G-GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 8755 0.7 0.511276
Target:  5'- cUCCCCGuCGCGaaacuguauCCCCCGCACaaACACCu -3'
miRNA:   3'- uGGGGGU-GUGU---------GGGGGUGUG--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 124859 0.7 0.511276
Target:  5'- cUCCCCGuCGCGaaacuguauCCCCCGCACaaACACCu -3'
miRNA:   3'- uGGGGGU-GUGU---------GGGGGUGUG--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 72343 0.7 0.520686
Target:  5'- gUCCCC-CACGCCUCCA---ACACCGg -3'
miRNA:   3'- uGGGGGuGUGUGGGGGUgugUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 153596 0.69 0.530163
Target:  5'- uCCCCCAaacCACUCCaccaUACGCACACCu -3'
miRNA:   3'- uGGGGGUgu-GUGGGG----GUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 158123 0.69 0.530163
Target:  5'- uGCCCCCcC-CGCCCgCCAC-CGCGCUc -3'
miRNA:   3'- -UGGGGGuGuGUGGG-GGUGuGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 139215 0.69 0.530163
Target:  5'- uGCCCCCcC-CGCCCgCCAC-CGCGCUc -3'
miRNA:   3'- -UGGGGGuGuGUGGG-GGUGuGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 3937 0.69 0.539702
Target:  5'- uGCUCCCACcUACCCgCACAgACACg- -3'
miRNA:   3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5'
9594 3' -60.6 NC_002577.1 + 129677 0.69 0.539702
Target:  5'- uGCUCCCACcUACCCgCACAgACACg- -3'
miRNA:   3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5'
9594 3' -60.6 NC_002577.1 + 91203 0.69 0.539702
Target:  5'- uACCCCCgugggucgACGCuCCCCCGCAuuCGCGgCCa -3'
miRNA:   3'- -UGGGGG--------UGUGuGGGGGUGU--GUGU-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.