Results 21 - 40 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 160604 | 0.68 | 0.607785 |
Target: 5'- gGCCCCC-CGCACCUCgACGCcUAUUGu -3' miRNA: 3'- -UGGGGGuGUGUGGGGgUGUGuGUGGC- -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 8968 | 0.69 | 0.567673 |
Target: 5'- uUCCCCgacuuacGCACGgacuCCCCCGCcCGCGCCa -3' miRNA: 3'- uGGGGG-------UGUGU----GGGGGUGuGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 142393 | 0.71 | 0.438882 |
Target: 5'- -gCCCUACuuGCCCCUA-ACGCACCGg -3' miRNA: 3'- ugGGGGUGugUGGGGGUgUGUGUGGC- -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 154782 | 0.74 | 0.286889 |
Target: 5'- gGCCCCCcCu--CCCCCACGCAgCGCCu -3' miRNA: 3'- -UGGGGGuGuguGGGGGUGUGU-GUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 101491 | 0.66 | 0.715424 |
Target: 5'- cGCCCCCGuC-CuCUaCCCACGCACGCUu -3' miRNA: 3'- -UGGGGGU-GuGuGG-GGGUGUGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 3697 | 0.67 | 0.666856 |
Target: 5'- cGCCCCCcC-C-CCCCCACAUAggaACCu -3' miRNA: 3'- -UGGGGGuGuGuGGGGGUGUGUg--UGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 158123 | 0.69 | 0.530163 |
Target: 5'- uGCCCCCcC-CGCCCgCCAC-CGCGCUc -3' miRNA: 3'- -UGGGGGuGuGUGGG-GGUGuGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 124936 | 0.78 | 0.170995 |
Target: 5'- uCCCggCCGCGCGCacaCCCACACACACCc -3' miRNA: 3'- uGGG--GGUGUGUGg--GGGUGUGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 156663 | 0.67 | 0.657032 |
Target: 5'- cCCCCCACGCcucugccgucuACCCCCcucccucuacGCAgACAUCc -3' miRNA: 3'- uGGGGGUGUG-----------UGGGGG----------UGUgUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 141515 | 0.8 | 0.127128 |
Target: 5'- uGCCCCCcgcccaACACcaccaccaccccGCCCCUACACACACCa -3' miRNA: 3'- -UGGGGG------UGUG------------UGGGGGUGUGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 3937 | 0.69 | 0.539702 |
Target: 5'- uGCUCCCACcUACCCgCACAgACACg- -3' miRNA: 3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 85387 | 0.67 | 0.647191 |
Target: 5'- uACUCCCACAUuCUCUauaGCACugGCCa -3' miRNA: 3'- -UGGGGGUGUGuGGGGg--UGUGugUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 158220 | 0.7 | 0.501937 |
Target: 5'- gACgCCCCACgGCucuCgUCCCGCACGCGCCu -3' miRNA: 3'- -UG-GGGGUG-UGu--G-GGGGUGUGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 160422 | 0.71 | 0.438882 |
Target: 5'- gGCCCCC-CACcCCCCCugaagcgugcCGCgACGCCGg -3' miRNA: 3'- -UGGGGGuGUGuGGGGGu---------GUG-UGUGGC- -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 4837 | 0.73 | 0.345224 |
Target: 5'- uACUCCCguGCACACCgCCgaggggggacacggcGCGCGCGCCGa -3' miRNA: 3'- -UGGGGG--UGUGUGGgGG---------------UGUGUGUGGC- -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 156628 | 0.74 | 0.293407 |
Target: 5'- cACCUCCGCAUACCCCCcCucCGCACgGu -3' miRNA: 3'- -UGGGGGUGUGUGGGGGuGu-GUGUGgC- -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 1369 | 0.66 | 0.743838 |
Target: 5'- cACCCUCGCcgGCCCCgACccucaauccgcgGCACGCCc -3' miRNA: 3'- -UGGGGGUGugUGGGGgUG------------UGUGUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 27772 | 0.66 | 0.724972 |
Target: 5'- aACUCCCGuCACAgaUCCgGCACugGCCa -3' miRNA: 3'- -UGGGGGU-GUGUg-GGGgUGUGugUGGc -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 11039 | 0.67 | 0.693226 |
Target: 5'- cGCCCCCgugggaggggggcgGCGuuucuaGCCCCCGgCGCGgGCCGc -3' miRNA: 3'- -UGGGGG--------------UGUg-----UGGGGGU-GUGUgUGGC- -5' |
|||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 156845 | 0.67 | 0.666856 |
Target: 5'- uCCCCUucaGC-CCCCCGCcuCGCACCc -3' miRNA: 3'- uGGGGGug-UGuGGGGGUGu-GUGUGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home