miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 3' -60.6 NC_002577.1 + 85387 0.67 0.647191
Target:  5'- uACUCCCACAUuCUCUauaGCACugGCCa -3'
miRNA:   3'- -UGGGGGUGUGuGGGGg--UGUGugUGGc -5'
9594 3' -60.6 NC_002577.1 + 90039 0.71 0.427673
Target:  5'- gACCUCCACAgACCCgCCACAacguucagacuucuuCGCCGg -3'
miRNA:   3'- -UGGGGGUGUgUGGG-GGUGUgu-------------GUGGC- -5'
9594 3' -60.6 NC_002577.1 + 91203 0.69 0.539702
Target:  5'- uACCCCCgugggucgACGCuCCCCCGCAuuCGCGgCCa -3'
miRNA:   3'- -UGGGGG--------UGUGuGGGGGUGU--GUGU-GGc -5'
9594 3' -60.6 NC_002577.1 + 92362 0.68 0.607785
Target:  5'- gUCUCCACGCACCaguUCGCGCACuCCa -3'
miRNA:   3'- uGGGGGUGUGUGGg--GGUGUGUGuGGc -5'
9594 3' -60.6 NC_002577.1 + 98251 0.67 0.647191
Target:  5'- uUCCCCAUGCACgCgUCACGCGCGuuGc -3'
miRNA:   3'- uGGGGGUGUGUG-GgGGUGUGUGUggC- -5'
9594 3' -60.6 NC_002577.1 + 98347 0.66 0.70581
Target:  5'- aACCCCgAUcuagcuACACCCCCGguCAUugCu -3'
miRNA:   3'- -UGGGGgUG------UGUGGGGGUguGUGugGc -5'
9594 3' -60.6 NC_002577.1 + 101364 0.68 0.617628
Target:  5'- gUCCCCgaaACGCCCCCcgaACGCcuuuuggagGCACCGa -3'
miRNA:   3'- uGGGGGug-UGUGGGGG---UGUG---------UGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 101491 0.66 0.715424
Target:  5'- cGCCCCCGuC-CuCUaCCCACGCACGCUu -3'
miRNA:   3'- -UGGGGGU-GuGuGG-GGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 103527 0.66 0.753139
Target:  5'- uCCCCUagcgGCGCGCCCCCGguacCAUAagaaGCUGa -3'
miRNA:   3'- uGGGGG----UGUGUGGGGGU----GUGUg---UGGC- -5'
9594 3' -60.6 NC_002577.1 + 109512 0.66 0.762341
Target:  5'- cCCUCCACuuaGCUUCCGCGgACGCUGc -3'
miRNA:   3'- uGGGGGUGug-UGGGGGUGUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 121962 0.74 0.32063
Target:  5'- gACCCgaccgcugauCCGCGCGCCCCUcCGgACGCCGa -3'
miRNA:   3'- -UGGG----------GGUGUGUGGGGGuGUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 122168 0.72 0.413273
Target:  5'- uCCCCCACACauccucccGCCCCCACAaccuccuCcCCGg -3'
miRNA:   3'- uGGGGGUGUG--------UGGGGGUGUgu-----GuGGC- -5'
9594 3' -60.6 NC_002577.1 + 122574 0.67 0.693226
Target:  5'- cGCCCCCgugggaggggggcgGCGuuucuaGCCCCCGgCGCGgGCCGc -3'
miRNA:   3'- -UGGGGG--------------UGUg-----UGGGGGU-GUGUgUGGC- -5'
9594 3' -60.6 NC_002577.1 + 122852 0.66 0.724972
Target:  5'- uCCCCCuucCACccgucggcgACCCCCGCgaACGCgaGCCGu -3'
miRNA:   3'- uGGGGGu--GUG---------UGGGGGUG--UGUG--UGGC- -5'
9594 3' -60.6 NC_002577.1 + 124624 0.67 0.666856
Target:  5'- uCCCCCGCccGCGCCaUCGcCAgACACCGa -3'
miRNA:   3'- uGGGGGUG--UGUGGgGGU-GUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 124785 0.74 0.293407
Target:  5'- uCCCCCAacuaAC-CCUUCGCGCGCACCGc -3'
miRNA:   3'- uGGGGGUg---UGuGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 124859 0.7 0.511276
Target:  5'- cUCCCCGuCGCGaaacuguauCCCCCGCACaaACACCu -3'
miRNA:   3'- uGGGGGU-GUGU---------GGGGGUGUG--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 124936 0.78 0.170995
Target:  5'- uCCCggCCGCGCGCacaCCCACACACACCc -3'
miRNA:   3'- uGGG--GGUGUGUGg--GGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 124973 1.07 0.001723
Target:  5'- cACCCCCACACACCCCCACACACACCGc -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 128777 0.73 0.345224
Target:  5'- uACUCCCguGCACACCgCCgaggggggacacggcGCGCGCGCCGa -3'
miRNA:   3'- -UGGGGG--UGUGUGGgGG---------------UGUGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.