miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 3' -60.6 NC_002577.1 + 1369 0.66 0.743838
Target:  5'- cACCCUCGCcgGCCCCgACccucaauccgcgGCACGCCc -3'
miRNA:   3'- -UGGGGGUGugUGGGGgUG------------UGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 2178 0.66 0.753139
Target:  5'- uACCCCUACAggccuaACCCCgACAacgACACUa -3'
miRNA:   3'- -UGGGGGUGUg-----UGGGGgUGUg--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 3697 0.67 0.666856
Target:  5'- cGCCCCCcC-C-CCCCCACAUAggaACCu -3'
miRNA:   3'- -UGGGGGuGuGuGGGGGUGUGUg--UGGc -5'
9594 3' -60.6 NC_002577.1 + 3937 0.69 0.539702
Target:  5'- uGCUCCCACcUACCCgCACAgACACg- -3'
miRNA:   3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5'
9594 3' -60.6 NC_002577.1 + 4837 0.73 0.345224
Target:  5'- uACUCCCguGCACACCgCCgaggggggacacggcGCGCGCGCCGa -3'
miRNA:   3'- -UGGGGG--UGUGUGGgGG---------------UGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 8640 1.07 0.001723
Target:  5'- cACCCCCACACACCCCCACACACACCGc -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 8677 0.78 0.170995
Target:  5'- uCCCggCCGCGCGCacaCCCACACACACCc -3'
miRNA:   3'- uGGG--GGUGUGUGg--GGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 8755 0.7 0.511276
Target:  5'- cUCCCCGuCGCGaaacuguauCCCCCGCACaaACACCu -3'
miRNA:   3'- uGGGGGU-GUGU---------GGGGGUGUG--UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 8829 0.74 0.293407
Target:  5'- uCCCCCAacuaAC-CCUUCGCGCGCACCGc -3'
miRNA:   3'- uGGGGGUg---UGuGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 8968 0.69 0.567673
Target:  5'- uUCCCCgacuuacGCACGgacuCCCCCGCcCGCGCCa -3'
miRNA:   3'- uGGGGG-------UGUGU----GGGGGUGuGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 10762 0.66 0.724972
Target:  5'- uCCCCCuucCACccgucggcgACCCCCGCgaACGCgaGCCGu -3'
miRNA:   3'- uGGGGGu--GUG---------UGGGGGUG--UGUG--UGGC- -5'
9594 3' -60.6 NC_002577.1 + 11039 0.67 0.693226
Target:  5'- cGCCCCCgugggaggggggcgGCGuuucuaGCCCCCGgCGCGgGCCGc -3'
miRNA:   3'- -UGGGGG--------------UGUg-----UGGGGGU-GUGUgUGGC- -5'
9594 3' -60.6 NC_002577.1 + 11446 0.72 0.413273
Target:  5'- uCCCCCACACauccucccGCCCCCACA---ACCu -3'
miRNA:   3'- uGGGGGUGUG--------UGGGGGUGUgugUGGc -5'
9594 3' -60.6 NC_002577.1 + 11652 0.74 0.32063
Target:  5'- gACCCgaccgcugauCCGCGCGCCCCUcCGgACGCCGa -3'
miRNA:   3'- -UGGG----------GGUGUGUGGGGGuGUgUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 12969 0.67 0.657032
Target:  5'- cUCCCCAUGCAUUUCCAUACgACACUu -3'
miRNA:   3'- uGGGGGUGUGUGGGGGUGUG-UGUGGc -5'
9594 3' -60.6 NC_002577.1 + 27772 0.66 0.724972
Target:  5'- aACUCCCGuCACAgaUCCgGCACugGCCa -3'
miRNA:   3'- -UGGGGGU-GUGUg-GGGgUGUGugUGGc -5'
9594 3' -60.6 NC_002577.1 + 45626 0.66 0.753139
Target:  5'- aACCCgCGCACAUCuCCUugACAUccagGCCc -3'
miRNA:   3'- -UGGGgGUGUGUGG-GGGugUGUG----UGGc -5'
9594 3' -60.6 NC_002577.1 + 51327 0.66 0.743838
Target:  5'- uGCCCCgagCACGgACCCCgGCACGUGCUu -3'
miRNA:   3'- -UGGGG---GUGUgUGGGGgUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 55198 0.67 0.647191
Target:  5'- cACUCCCGaauucgcaGCGCCCCUGCugGCAUa- -3'
miRNA:   3'- -UGGGGGUg-------UGUGGGGGUGugUGUGgc -5'
9594 3' -60.6 NC_002577.1 + 72343 0.7 0.520686
Target:  5'- gUCCCC-CACGCCUCCA---ACACCGg -3'
miRNA:   3'- uGGGGGuGUGUGGGGGUgugUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.