miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 3' -60.6 NC_002577.1 + 162184 0.69 0.582288
Target:  5'- cGCCUCUAUACcuguucccagaacgaAUgCCCCGCGCGCACCu -3'
miRNA:   3'- -UGGGGGUGUG---------------UG-GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 160604 0.68 0.607785
Target:  5'- gGCCCCC-CGCACCUCgACGCcUAUUGu -3'
miRNA:   3'- -UGGGGGuGUGUGGGGgUGUGuGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 160473 0.66 0.752213
Target:  5'- aGCgCCCACguugcuuuccgugGCGCgaCCCCGCGCGCAUUa -3'
miRNA:   3'- -UGgGGGUG-------------UGUG--GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 160422 0.71 0.438882
Target:  5'- gGCCCCC-CACcCCCCCugaagcgugcCGCgACGCCGg -3'
miRNA:   3'- -UGGGGGuGUGuGGGGGu---------GUG-UGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 159918 0.71 0.45645
Target:  5'- gACCCCCuCGCACUCCaGCGCGCAagCGu -3'
miRNA:   3'- -UGGGGGuGUGUGGGGgUGUGUGUg-GC- -5'
9594 3' -60.6 NC_002577.1 + 159764 0.67 0.676653
Target:  5'- ---gCCGCgACGCCCCgGCGCACGCgGu -3'
miRNA:   3'- ugggGGUG-UGUGGGGgUGUGUGUGgC- -5'
9594 3' -60.6 NC_002577.1 + 159279 0.71 0.438882
Target:  5'- uUCCCCAUuu-CCUCCACGUACACCGg -3'
miRNA:   3'- uGGGGGUGuguGGGGGUGUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 158220 0.7 0.501937
Target:  5'- gACgCCCCACgGCucuCgUCCCGCACGCGCCu -3'
miRNA:   3'- -UG-GGGGUG-UGu--G-GGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 158123 0.69 0.530163
Target:  5'- uGCCCCCcC-CGCCCgCCAC-CGCGCUc -3'
miRNA:   3'- -UGGGGGuGuGUGGG-GGUGuGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 157583 0.71 0.447618
Target:  5'- -gCUCCGCGCACCCCgACGUACGCUu -3'
miRNA:   3'- ugGGGGUGUGUGGGGgUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 157246 0.68 0.588156
Target:  5'- cGCCgUCGCGaGCCCCCGCGCGcCACa- -3'
miRNA:   3'- -UGGgGGUGUgUGGGGGUGUGU-GUGgc -5'
9594 3' -60.6 NC_002577.1 + 156845 0.67 0.666856
Target:  5'- uCCCCUucaGC-CCCCCGCcuCGCACCc -3'
miRNA:   3'- uGGGGGug-UGuGGGGGUGu-GUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 156663 0.67 0.657032
Target:  5'- cCCCCCACGCcucugccgucuACCCCCcucccucuacGCAgACAUCc -3'
miRNA:   3'- uGGGGGUGUG-----------UGGGGG----------UGUgUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 156628 0.74 0.293407
Target:  5'- cACCUCCGCAUACCCCCcCucCGCACgGu -3'
miRNA:   3'- -UGGGGGUGUGUGGGGGuGu-GUGUGgC- -5'
9594 3' -60.6 NC_002577.1 + 156528 0.66 0.70581
Target:  5'- cCCCCUACACcaccuccccuuaGCCCCCcuccuccuACGC-CACCc -3'
miRNA:   3'- uGGGGGUGUG------------UGGGGG--------UGUGuGUGGc -5'
9594 3' -60.6 NC_002577.1 + 155823 0.8 0.127128
Target:  5'- uGCCCCCcgcccaACACcaccaccaccccGCCCCUACACACACCa -3'
miRNA:   3'- -UGGGGG------UGUG------------UGGGGGUGUGUGUGGc -5'
9594 3' -60.6 NC_002577.1 + 155390 0.66 0.724972
Target:  5'- uGCCCCCGgGgAgCCUaguaGCGCugACCGc -3'
miRNA:   3'- -UGGGGGUgUgUgGGGg---UGUGugUGGC- -5'
9594 3' -60.6 NC_002577.1 + 154944 0.71 0.438882
Target:  5'- -gCCCUACuuGCCCCUA-ACGCACCGg -3'
miRNA:   3'- ugGGGGUGugUGGGGGUgUGUGUGGC- -5'
9594 3' -60.6 NC_002577.1 + 154782 0.74 0.286889
Target:  5'- gGCCCCCcCu--CCCCCACGCAgCGCCu -3'
miRNA:   3'- -UGGGGGuGuguGGGGGUGUGU-GUGGc -5'
9594 3' -60.6 NC_002577.1 + 153596 0.69 0.530163
Target:  5'- uCCCCCAaacCACUCCaccaUACGCACACCu -3'
miRNA:   3'- uGGGGGUgu-GUGGGG----GUGUGUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.