Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 143138 | 0.69 | 0.558948 |
Target: 5'- uGCUCgCCGCACGCCCCgGuCcCACACUa -3' miRNA: 3'- -UGGG-GGUGUGUGGGGgU-GuGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 140492 | 0.67 | 0.666856 |
Target: 5'- uCCCCUucaGC-CCCCCGCcuCGCACCc -3' miRNA: 3'- uGGGGGug-UGuGGGGGUGu-GUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 12969 | 0.67 | 0.657032 |
Target: 5'- cUCCCCAUGCAUUUCCAUACgACACUu -3' miRNA: 3'- uGGGGGUGUGUGGGGGUGUG-UGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 55198 | 0.67 | 0.647191 |
Target: 5'- cACUCCCGaauucgcaGCGCCCCUGCugGCAUa- -3' miRNA: 3'- -UGGGGGUg-------UGUGGGGGUGugUGUGgc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 101364 | 0.68 | 0.617628 |
Target: 5'- gUCCCCgaaACGCCCCCcgaACGCcuuuuggagGCACCGa -3' miRNA: 3'- uGGGGGug-UGUGGGGG---UGUG---------UGUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 136734 | 0.68 | 0.607785 |
Target: 5'- gGCCCCC-CGCACCUCgACGCcUAUUGu -3' miRNA: 3'- -UGGGGGuGUGUGGGGgUGUGuGUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 92362 | 0.68 | 0.607785 |
Target: 5'- gUCUCCACGCACCaguUCGCGCACuCCa -3' miRNA: 3'- uGGGGGUGUGUGGg--GGUGUGUGuGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 157246 | 0.68 | 0.588156 |
Target: 5'- cGCCgUCGCGaGCCCCCGCGCGcCACa- -3' miRNA: 3'- -UGGgGGUGUgUGGGGGUGUGU-GUGgc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 135144 | 0.69 | 0.582288 |
Target: 5'- cGCCUCUAUACcuguucccagaacgaAUgCCCCGCGCGCACCu -3' miRNA: 3'- -UGGGGGUGUG---------------UG-GGGGUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 129917 | 0.67 | 0.666856 |
Target: 5'- cGCCCCCcC-C-CCCCCACAUAggaACCu -3' miRNA: 3'- -UGGGGGuGuGuGGGGGUGUGUg--UGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 124624 | 0.67 | 0.666856 |
Target: 5'- uCCCCCGCccGCGCCaUCGcCAgACACCGa -3' miRNA: 3'- uGGGGGUG--UGUGGgGGU-GUgUGUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 159764 | 0.67 | 0.676653 |
Target: 5'- ---gCCGCgACGCCCCgGCGCACGCgGu -3' miRNA: 3'- ugggGGUG-UGUGGGGgUGUGUGUGgC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 131435 | 0.66 | 0.753139 |
Target: 5'- uACCCCUACAggccuaACCCCgACAacgACACUa -3' miRNA: 3'- -UGGGGGUGUg-----UGGGGgUGUg--UGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 136865 | 0.66 | 0.752213 |
Target: 5'- aGCgCCCACguugcuuuccgugGCGCgaCCCCGCGCGCAUUa -3' miRNA: 3'- -UGgGGGUG-------------UGUG--GGGGUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 132245 | 0.66 | 0.743838 |
Target: 5'- cACCCUCGCcgGCCCCgACccucaauccgcgGCACGCCc -3' miRNA: 3'- -UGGGGGUGugUGGGGgUG------------UGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 51327 | 0.66 | 0.743838 |
Target: 5'- uGCCCCgagCACGgACCCCgGCACGUGCUu -3' miRNA: 3'- -UGGGG---GUGUgUGGGGgUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 122852 | 0.66 | 0.724972 |
Target: 5'- uCCCCCuucCACccgucggcgACCCCCGCgaACGCgaGCCGu -3' miRNA: 3'- uGGGGGu--GUG---------UGGGGGUG--UGUG--UGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 141948 | 0.66 | 0.724972 |
Target: 5'- uGCCCCCGgGgAgCCUaguaGCGCugACCGc -3' miRNA: 3'- -UGGGGGUgUgUgGGGg---UGUGugUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 140810 | 0.66 | 0.70581 |
Target: 5'- cCCCCUACACcaccuccccuuaGCCCCCcuccuccuACGC-CACCc -3' miRNA: 3'- uGGGGGUGUG------------UGGGGG--------UGUGuGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 122574 | 0.67 | 0.693226 |
Target: 5'- cGCCCCCgugggaggggggcgGCGuuucuaGCCCCCGgCGCGgGCCGc -3' miRNA: 3'- -UGGGGG--------------UGUg-----UGGGGGU-GUGUgUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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