miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9595 3' -48.5 NC_002577.1 + 123068 0.66 0.999824
Target:  5'- -aGUCGGGgggcgacccgcgACCGuGUUCCGCGagCGGc -3'
miRNA:   3'- ggCAGCCU------------UGGCuUAAGGUGUaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 10546 0.66 0.999824
Target:  5'- -aGUCGGGgggcgacccgcgACCGuGUUCCGCGagCGGc -3'
miRNA:   3'- ggCAGCCU------------UGGCuUAAGGUGUaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 118481 0.66 0.999716
Target:  5'- cCUGUaUGGAACCG--UUCCGaGUUCGGg -3'
miRNA:   3'- -GGCA-GCCUUGGCuuAAGGUgUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 134619 0.66 0.999709
Target:  5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3'
miRNA:   3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5'
9595 3' -48.5 NC_002577.1 + 162708 0.66 0.999709
Target:  5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3'
miRNA:   3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5'
9595 3' -48.5 NC_002577.1 + 27815 0.66 0.999642
Target:  5'- gCGUCGGuuACUGAAU-CCGgAUUCa- -3'
miRNA:   3'- gGCAGCCu-UGGCUUAaGGUgUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 132846 0.66 0.999617
Target:  5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3'
miRNA:   3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5'
9595 3' -48.5 NC_002577.1 + 767 0.66 0.999617
Target:  5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3'
miRNA:   3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5'
9595 3' -48.5 NC_002577.1 + 78429 0.67 0.999314
Target:  5'- cCCGUCGGAcUCGAAUUgCCGac--CGAu -3'
miRNA:   3'- -GGCAGCCUuGGCUUAA-GGUguaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 122846 0.67 0.999314
Target:  5'- gCGUCGGcgacgcGGCCGAAcgCCGCucgCGGa -3'
miRNA:   3'- gGCAGCC------UUGGCUUaaGGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 10767 0.67 0.999314
Target:  5'- gCGUCGGcgacgcGGCCGAAcgCCGCucgCGGa -3'
miRNA:   3'- gGCAGCC------UUGGCUUaaGGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 122237 0.67 0.999158
Target:  5'- cCCGUCGGGAgcgaucCCGGAUcggacgCCGCgg-CGAa -3'
miRNA:   3'- -GGCAGCCUU------GGCUUAa-----GGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 11377 0.67 0.999158
Target:  5'- cCCGUCGGGAgcgaucCCGGAUcggacgCCGCgg-CGAa -3'
miRNA:   3'- -GGCAGCCUU------GGCUUAa-----GGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 42871 0.68 0.998752
Target:  5'- gCCGUCGGuACCGAAaauaaaCCGCcagCGGu -3'
miRNA:   3'- -GGCAGCCuUGGCUUaa----GGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 5587 0.68 0.998493
Target:  5'- gCCGcUCGGAccGCUGcGAUUCCAUccUUCGAc -3'
miRNA:   3'- -GGC-AGCCU--UGGC-UUAAGGUGu-AAGCU- -5'
9595 3' -48.5 NC_002577.1 + 128027 0.68 0.998493
Target:  5'- gCCGcUCGGAccGCUGcGAUUCCAUccUUCGAc -3'
miRNA:   3'- -GGC-AGCCU--UGGC-UUAAGGUGu-AAGCU- -5'
9595 3' -48.5 NC_002577.1 + 158395 0.68 0.997839
Target:  5'- gCCGUgGGGcgucccGCCGggUUCCGgAUUUc- -3'
miRNA:   3'- -GGCAgCCU------UGGCuuAAGGUgUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 138942 0.68 0.997839
Target:  5'- gCCGUgGGGcgucccGCCGggUUCCGgAUUUc- -3'
miRNA:   3'- -GGCAgCCU------UGGCuuAAGGUgUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 22087 0.69 0.996962
Target:  5'- gCGUCGGGucGCCcacgcaaacGAAUucuuuggagUCCACAUUUGAg -3'
miRNA:   3'- gGCAGCCU--UGG---------CUUA---------AGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 125017 0.69 0.996423
Target:  5'- -gGUCGGAACucgCGAcUUCCACggUCGc -3'
miRNA:   3'- ggCAGCCUUG---GCUuAAGGUGuaAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.