miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9595 3' -48.5 NC_002577.1 + 22087 0.69 0.996962
Target:  5'- gCGUCGGGucGCCcacgcaaacGAAUucuuuggagUCCACAUUUGAg -3'
miRNA:   3'- gGCAGCCU--UGG---------CUUA---------AGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 21337 0.69 0.996423
Target:  5'- cCUGUUGGcugCGAAUUUCACAUUUGGc -3'
miRNA:   3'- -GGCAGCCuugGCUUAAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 11377 0.67 0.999158
Target:  5'- cCCGUCGGGAgcgaucCCGGAUcggacgCCGCgg-CGAa -3'
miRNA:   3'- -GGCAGCCUU------GGCUUAa-----GGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 10767 0.67 0.999314
Target:  5'- gCGUCGGcgacgcGGCCGAAcgCCGCucgCGGa -3'
miRNA:   3'- gGCAGCC------UUGGCUUaaGGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 10546 0.66 0.999824
Target:  5'- -aGUCGGGgggcgacccgcgACCGuGUUCCGCGagCGGc -3'
miRNA:   3'- ggCAGCCU------------UGGCuUAAGGUGUaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 8733 1.13 0.012772
Target:  5'- cCCGUCGGAACCGAAUUCCACAUUCGAg -3'
miRNA:   3'- -GGCAGCCUUGGCUUAAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 8597 0.69 0.996423
Target:  5'- -gGUCGGAACucgCGAcUUCCACggUCGc -3'
miRNA:   3'- ggCAGCCUUG---GCUuAAGGUGuaAGCu -5'
9595 3' -48.5 NC_002577.1 + 8505 0.69 0.99511
Target:  5'- gCgGcCGGGACgGGAUUCCugAUUCc- -3'
miRNA:   3'- -GgCaGCCUUGgCUUAAGGugUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 5587 0.68 0.998493
Target:  5'- gCCGcUCGGAccGCUGcGAUUCCAUccUUCGAc -3'
miRNA:   3'- -GGC-AGCCU--UGGC-UUAAGGUGu-AAGCU- -5'
9595 3' -48.5 NC_002577.1 + 767 0.66 0.999617
Target:  5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3'
miRNA:   3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.