miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9595 5' -55.3 NC_002577.1 + 130935 0.66 0.949435
Target:  5'- cACGGGacgcguauucGUCGGGAccgCCUuUCuCCGGCa -3'
miRNA:   3'- aUGCCU----------UAGUCCUua-GGGcAG-GGCCG- -5'
9595 5' -55.3 NC_002577.1 + 2679 0.66 0.949435
Target:  5'- cACGGGacgcguauucGUCGGGAccgCCUuUCuCCGGCa -3'
miRNA:   3'- aUGCCU----------UAGUCCUua-GGGcAG-GGCCG- -5'
9595 5' -55.3 NC_002577.1 + 89569 0.66 0.94817
Target:  5'- aUGCGGGAacguauaccgacgaUCuuGGAuuguuggucuGUUCUGUCCUGGCg -3'
miRNA:   3'- -AUGCCUU--------------AGu-CCU----------UAGGGCAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 107575 0.66 0.945138
Target:  5'- gACGGGG--GGGAGaUCCGgUCCGGCg -3'
miRNA:   3'- aUGCCUUagUCCUUaGGGCaGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 138601 0.66 0.945138
Target:  5'- gUGCGaaccAUC-GGAG-CCCGaUCCCGGCu -3'
miRNA:   3'- -AUGCcu--UAGuCCUUaGGGC-AGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 158737 0.66 0.945138
Target:  5'- gUGCGaaccAUC-GGAG-CCCGaUCCCGGCu -3'
miRNA:   3'- -AUGCcu--UAGuCCUUaGGGC-AGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 162900 0.66 0.940609
Target:  5'- aGCGGAGcucguugCAGG-AUCCCGa--CGGCg -3'
miRNA:   3'- aUGCCUUa------GUCCuUAGGGCaggGCCG- -5'
9595 5' -55.3 NC_002577.1 + 34254 0.66 0.940609
Target:  5'- -cCGGGuuucCGGGGauggcaaaGUCCCGcguaaaauucaUCCCGGCg -3'
miRNA:   3'- auGCCUua--GUCCU--------UAGGGC-----------AGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 11368 0.66 0.940609
Target:  5'- aACGaGAgccccGUCGGGAgcgAUCCCGgaucggacgCCgCGGCg -3'
miRNA:   3'- aUGC-CU-----UAGUCCU---UAGGGCa--------GG-GCCG- -5'
9595 5' -55.3 NC_002577.1 + 122246 0.66 0.940609
Target:  5'- aACGaGAgccccGUCGGGAgcgAUCCCGgaucggacgCCgCGGCg -3'
miRNA:   3'- aUGC-CU-----UAGUCCU---UAGGGCa--------GG-GCCG- -5'
9595 5' -55.3 NC_002577.1 + 134428 0.66 0.940609
Target:  5'- aGCGGAGcucguugCAGG-AUCCCGa--CGGCg -3'
miRNA:   3'- aUGCCUUa------GUCCuUAGGGCaggGCCG- -5'
9595 5' -55.3 NC_002577.1 + 78392 0.66 0.935845
Target:  5'- gGCGGAG-CGuGGGA-CCCGUCa-GGCg -3'
miRNA:   3'- aUGCCUUaGU-CCUUaGGGCAGggCCG- -5'
9595 5' -55.3 NC_002577.1 + 123012 0.66 0.935845
Target:  5'- cGCGGggUCGG--AUCUCGUUCuCGuGCg -3'
miRNA:   3'- aUGCCuuAGUCcuUAGGGCAGG-GC-CG- -5'
9595 5' -55.3 NC_002577.1 + 10602 0.66 0.935845
Target:  5'- cGCGGggUCGG--AUCUCGUUCuCGuGCg -3'
miRNA:   3'- aUGCCuuAGUCcuUAGGGCAGG-GC-CG- -5'
9595 5' -55.3 NC_002577.1 + 11834 0.66 0.930332
Target:  5'- cGCGGAucagcgGUCGGGucgcGAUCgCGUCCgucggauCGGCg -3'
miRNA:   3'- aUGCCU------UAGUCC----UUAGgGCAGG-------GCCG- -5'
9595 5' -55.3 NC_002577.1 + 121779 0.66 0.930332
Target:  5'- cGCGGAucagcgGUCGGGucgcGAUCgCGUCCgucggauCGGCg -3'
miRNA:   3'- aUGCCU------UAGUCC----UUAGgGCAGG-------GCCG- -5'
9595 5' -55.3 NC_002577.1 + 42570 0.67 0.914423
Target:  5'- uUugGGAAUgGGGAccAUUCCuucaggCCUGGCa -3'
miRNA:   3'- -AugCCUUAgUCCU--UAGGGca----GGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 132573 0.67 0.908477
Target:  5'- cGCGGGGggcuggCGGaGAccgCCUcuGUCCCGGCg -3'
miRNA:   3'- aUGCCUUa-----GUC-CUua-GGG--CAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 1040 0.67 0.908477
Target:  5'- cGCGGGGggcuggCGGaGAccgCCUcuGUCCCGGCg -3'
miRNA:   3'- aUGCCUUa-----GUC-CUua-GGG--CAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 1563 0.67 0.902297
Target:  5'- cGCGGAuugaggGUCGGGGccggcgaggGUgUCGUUCCGGUg -3'
miRNA:   3'- aUGCCU------UAGUCCU---------UAgGGCAGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.