miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9596 5' -53.4 NC_002577.1 + 28379 0.66 0.976789
Target:  5'- uGGUACGCGCua-GUGAaaucUCGCUuggaCGCGg -3'
miRNA:   3'- -CCGUGCGCGuagUAUUc---AGCGA----GCGC- -5'
9596 5' -53.4 NC_002577.1 + 124446 0.66 0.976789
Target:  5'- uGGCGCGgGCGggg-GAGUCcgUCGCGu -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGcgAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 9168 0.66 0.976789
Target:  5'- uGGCGCGgGCGggg-GAGUCcgUCGCGu -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGcgAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 1504 0.66 0.974243
Target:  5'- uGUGCGCGCAUg------CGCUCGCGc -3'
miRNA:   3'- cCGUGCGCGUAguauucaGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 132110 0.66 0.974243
Target:  5'- uGUGCGCGCAUg------CGCUCGCGc -3'
miRNA:   3'- cCGUGCGCGUAguauucaGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 36483 0.66 0.9715
Target:  5'- uGCGcCGCGCAUUGUGcaucGUCGUacUCGUGa -3'
miRNA:   3'- cCGU-GCGCGUAGUAUu---CAGCG--AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 48484 0.66 0.968553
Target:  5'- --gACG-GCG-CAUGAGUCGC-CGCGg -3'
miRNA:   3'- ccgUGCgCGUaGUAUUCAGCGaGCGC- -5'
9596 5' -53.4 NC_002577.1 + 21186 0.67 0.964073
Target:  5'- cGGCAaccuccggauagaGCGgAgCAgaggGAGUCGUUCGCGa -3'
miRNA:   3'- -CCGUg------------CGCgUaGUa---UUCAGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 33521 0.67 0.958427
Target:  5'- cGGaACGCGUAaCG--AGcCGCUCGCGa -3'
miRNA:   3'- -CCgUGCGCGUaGUauUCaGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 30524 0.67 0.958427
Target:  5'- aGGCGCGCGCAcUAcAAGUacauugcgCGCUCuCGa -3'
miRNA:   3'- -CCGUGCGCGUaGUaUUCA--------GCGAGcGC- -5'
9596 5' -53.4 NC_002577.1 + 53875 0.67 0.958427
Target:  5'- uGGCGCuuGCGuCAUCAUGAGUUGaagaCUUGUa -3'
miRNA:   3'- -CCGUG--CGC-GUAGUAUUCAGC----GAGCGc -5'
9596 5' -53.4 NC_002577.1 + 155312 0.67 0.954605
Target:  5'- cGCACGaacCGCAc----AGUCGCUCGCa -3'
miRNA:   3'- cCGUGC---GCGUaguauUCAGCGAGCGc -5'
9596 5' -53.4 NC_002577.1 + 102000 0.67 0.95421
Target:  5'- gGGCcaaaaauACG-GUAUCA-AAGUCGCUCGgGg -3'
miRNA:   3'- -CCG-------UGCgCGUAGUaUUCAGCGAGCgC- -5'
9596 5' -53.4 NC_002577.1 + 156153 0.67 0.950552
Target:  5'- --gGCGCGCAUCAgGGGUCucCUgGCGa -3'
miRNA:   3'- ccgUGCGCGUAGUaUUCAGc-GAgCGC- -5'
9596 5' -53.4 NC_002577.1 + 141185 0.67 0.950552
Target:  5'- --gGCGCGCAUCAgGGGUCucCUgGCGa -3'
miRNA:   3'- ccgUGCGCGUAGUaUUCAGc-GAgCGC- -5'
9596 5' -53.4 NC_002577.1 + 20829 0.67 0.950552
Target:  5'- aGCAUGCGCGgaggaAUGcuaUCGCUCGCu -3'
miRNA:   3'- cCGUGCGCGUag---UAUuc-AGCGAGCGc -5'
9596 5' -53.4 NC_002577.1 + 31950 0.67 0.948008
Target:  5'- aGCACGCugugacagGCAgugCGUAAGUUGCcggcuccuacgcccaUCGCGa -3'
miRNA:   3'- cCGUGCG--------CGUa--GUAUUCAGCG---------------AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 154706 0.67 0.944932
Target:  5'- cGGCAcCGCGCuccugguaggugcuGUCG--GGUCGCgcgaUCGCGu -3'
miRNA:   3'- -CCGU-GCGCG--------------UAGUauUCAGCG----AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 142630 0.67 0.944932
Target:  5'- cGGCAcCGCGCuccugguaggugcuGUCG--GGUCGCgcgaUCGCGu -3'
miRNA:   3'- -CCGU-GCGCG--------------UAGUauUCAGCG----AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 7964 0.68 0.941739
Target:  5'- gGGCGCGgGCAgg--GAGUUaaCUCGCGa -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGc-GAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.