miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9606 3' -54.8 NC_002577.1 + 160387 0.66 0.953183
Target:  5'- gGCUcCGCG-GAGCGCgaccggcccucggaCGUuccggaAGAGGCCg -3'
miRNA:   3'- gCGA-GCGCuCUCGCGa-------------GUA------UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 136950 0.66 0.953183
Target:  5'- gGCUcCGCG-GAGCGCgaccggcccucggaCGUuccggaAGAGGCCg -3'
miRNA:   3'- gCGA-GCGCuCUCGCGa-------------GUA------UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 11696 0.66 0.951573
Target:  5'- uGCggagCGCGAGAGCGgagccGGGGACg -3'
miRNA:   3'- gCGa---GCGCUCUCGCgaguaUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 121918 0.66 0.951573
Target:  5'- uGCggagCGCGAGAGCGgagccGGGGACg -3'
miRNA:   3'- gCGa---GCGCUCUCGCgaguaUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 159726 0.66 0.949926
Target:  5'- aCGCUUGCGcgcuGGAGUGCgagggggUCGUGGcggcgcuucugcgcGGACCc -3'
miRNA:   3'- -GCGAGCGC----UCUCGCG-------AGUAUC--------------UCUGG- -5'
9606 3' -54.8 NC_002577.1 + 137611 0.66 0.949926
Target:  5'- aCGCUUGCGcgcuGGAGUGCgagggggUCGUGGcggcgcuucugcgcGGACCc -3'
miRNA:   3'- -GCGAGCGC----UCUCGCG-------AGUAUC--------------UCUGG- -5'
9606 3' -54.8 NC_002577.1 + 16549 0.66 0.947386
Target:  5'- gGCUCGCagccGGAGcCGaagUCGgucUGGAGACCg -3'
miRNA:   3'- gCGAGCGc---UCUC-GCg--AGU---AUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 133953 0.66 0.946955
Target:  5'- uGCUCGCuAGGGUccgccgcgcgcauGCUCGcUAGGGuCCg -3'
miRNA:   3'- gCGAGCGcUCUCG-------------CGAGU-AUCUCuGG- -5'
9606 3' -54.8 NC_002577.1 + 163374 0.66 0.946955
Target:  5'- uGCUCGCuAGGGUccgccgcgcgcauGCUCGcUAGGGuCCg -3'
miRNA:   3'- gCGAGCGcUCUCG-------------CGAGU-AUCUCuGG- -5'
9606 3' -54.8 NC_002577.1 + 32771 0.66 0.942968
Target:  5'- aGCcauaCGCGAGAacuGCaGUUCuuauUGGAGGCCa -3'
miRNA:   3'- gCGa---GCGCUCU---CG-CGAGu---AUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 81096 0.66 0.938315
Target:  5'- aGCUcaCGCGcugcAGAGCGCg---AGAGACg -3'
miRNA:   3'- gCGA--GCGC----UCUCGCGaguaUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 20708 0.67 0.928298
Target:  5'- aGgUCGCGGaAGCGCUCGgGGAacuucacaugccGACCc -3'
miRNA:   3'- gCgAGCGCUcUCGCGAGUaUCU------------CUGG- -5'
9606 3' -54.8 NC_002577.1 + 57418 0.68 0.905412
Target:  5'- gGUUgGCGAuuGuGCGCUCAUcuggggcgguggAGAGAUCg -3'
miRNA:   3'- gCGAgCGCU--CuCGCGAGUA------------UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 59423 0.68 0.878803
Target:  5'- gCGCUCGCGAuGGCGCUCGg------- -3'
miRNA:   3'- -GCGAGCGCUcUCGCGAGUaucucugg -5'
9606 3' -54.8 NC_002577.1 + 155328 0.68 0.878091
Target:  5'- uCGCUCGCaGGAGCGCgUCG-AGGGuuaaugucuccuuACCu -3'
miRNA:   3'- -GCGAGCGcUCUCGCG-AGUaUCUC-------------UGG- -5'
9606 3' -54.8 NC_002577.1 + 95365 0.68 0.871592
Target:  5'- gGCggCGCGAcauucGAGUGCcUAUAGgAGACCg -3'
miRNA:   3'- gCGa-GCGCU-----CUCGCGaGUAUC-UCUGG- -5'
9606 3' -54.8 NC_002577.1 + 72137 0.69 0.864169
Target:  5'- gGCUUGCGAgccGAGC-UUUAUGGAGugCc -3'
miRNA:   3'- gCGAGCGCU---CUCGcGAGUAUCUCugG- -5'
9606 3' -54.8 NC_002577.1 + 160106 0.69 0.856536
Target:  5'- cCGUUCGCGuAGgccgcguacacGGCGCUCcu-GAGAUCa -3'
miRNA:   3'- -GCGAGCGC-UC-----------UCGCGAGuauCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 137232 0.69 0.856536
Target:  5'- cCGUUCGCGuAGgccgcguacacGGCGCUCcu-GAGAUCa -3'
miRNA:   3'- -GCGAGCGC-UC-----------UCGCGAGuauCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 48857 0.69 0.855762
Target:  5'- -cCUCGaCGAGAGCGCaUCucuggggAUGGGGACa -3'
miRNA:   3'- gcGAGC-GCUCUCGCG-AG-------UAUCUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.