miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9607 3' -62.2 NC_002577.1 + 159056 0.66 0.668857
Target:  5'- gCCGGccgcGGCCGcgccguccuccgcGGcCGCGGCCGCGGc -3'
miRNA:   3'- -GGUCuu--UCGGC-------------CCcGCGCCGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 138282 0.66 0.668857
Target:  5'- gCCGGccgcGGCCGcgccguccuccgcGGcCGCGGCCGCGGc -3'
miRNA:   3'- -GGUCuu--UCGGC-------------CCcGCGCCGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 138507 0.66 0.666904
Target:  5'- -gGGGAGGCCGGGGUaggggaugggaagcGCGGgUCGCc-- -3'
miRNA:   3'- ggUCUUUCGGCCCCG--------------CGCC-GGCGcuu -5'
9607 3' -62.2 NC_002577.1 + 158831 0.66 0.666904
Target:  5'- -gGGGAGGCCGGGGUaggggaugggaagcGCGGgUCGCc-- -3'
miRNA:   3'- ggUCUUUCGGCCCCG--------------CGCC-GGCGcuu -5'
9607 3' -62.2 NC_002577.1 + 42425 0.66 0.660063
Target:  5'- aCCGGguAGCgCGcGGGUGacgaCGGCCGCa-- -3'
miRNA:   3'- -GGUCuuUCG-GC-CCCGC----GCCGGCGcuu -5'
9607 3' -62.2 NC_002577.1 + 58194 0.66 0.650274
Target:  5'- cCCGGAAgaaauugggcGGCCGucuucugGCGGCCGCGAAa -3'
miRNA:   3'- -GGUCUU----------UCGGCcccg---CGCCGGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 136220 0.66 0.64047
Target:  5'- aCCGGGGucccCCGGGGgGCGaGCCGgGc- -3'
miRNA:   3'- -GGUCUUuc--GGCCCCgCGC-CGGCgCuu -5'
9607 3' -62.2 NC_002577.1 + 161118 0.66 0.64047
Target:  5'- aCCGGGGucccCCGGGGgGCGaGCCGgGc- -3'
miRNA:   3'- -GGUCUUuc--GGCCCCgCGC-CGGCgCuu -5'
9607 3' -62.2 NC_002577.1 + 137493 0.66 0.620853
Target:  5'- gCAGGGAuGuCCGGacGCGCGGgCGCGAc -3'
miRNA:   3'- gGUCUUU-C-GGCCc-CGCGCCgGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 159845 0.66 0.620853
Target:  5'- gCAGGGAuGuCCGGacGCGCGGgCGCGAc -3'
miRNA:   3'- gGUCUUU-C-GGCCc-CGCGCCgGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 125291 0.66 0.620853
Target:  5'- uUAGAGAGCgCGGGcguuucGCGCcGCUGCGGc -3'
miRNA:   3'- gGUCUUUCG-GCCC------CGCGcCGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 8323 0.66 0.620853
Target:  5'- uUAGAGAGCgCGGGcguuucGCGCcGCUGCGGc -3'
miRNA:   3'- gGUCUUUCG-GCCC------CGCGcCGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 162255 0.67 0.611053
Target:  5'- gCCGGcGAGcCCGcGGGCGCGuucGCCGUa-- -3'
miRNA:   3'- -GGUCuUUC-GGC-CCCGCGC---CGGCGcuu -5'
9607 3' -62.2 NC_002577.1 + 135073 0.67 0.611053
Target:  5'- gCCGGcGAGcCCGcGGGCGCGuucGCCGUa-- -3'
miRNA:   3'- -GGUCuUUC-GGC-CCCGCGC---CGGCGcuu -5'
9607 3' -62.2 NC_002577.1 + 137670 0.67 0.608116
Target:  5'- uCCGGAcaucccuGCCGGGGaCGguuucgcgucuaccCGGCCGCuGAAc -3'
miRNA:   3'- -GGUCUuu-----CGGCCCC-GC--------------GCCGGCG-CUU- -5'
9607 3' -62.2 NC_002577.1 + 128365 0.67 0.601268
Target:  5'- cUCGGAacGAGUCGGGGaa-GGgCGCGAAa -3'
miRNA:   3'- -GGUCU--UUCGGCCCCgcgCCgGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 125615 0.67 0.601268
Target:  5'- gCAGAAGcGCCGGGGC-CGaauCCGgGAAg -3'
miRNA:   3'- gGUCUUU-CGGCCCCGcGCc--GGCgCUU- -5'
9607 3' -62.2 NC_002577.1 + 160187 0.67 0.601268
Target:  5'- uCCGGAAcGuCCGaGGGC-CGGUCGCGc- -3'
miRNA:   3'- -GGUCUUuC-GGC-CCCGcGCCGGCGCuu -5'
9607 3' -62.2 NC_002577.1 + 137151 0.67 0.601268
Target:  5'- uCCGGAAcGuCCGaGGGC-CGGUCGCGc- -3'
miRNA:   3'- -GGUCUUuC-GGC-CCCGcGCCGGCGCuu -5'
9607 3' -62.2 NC_002577.1 + 5249 0.67 0.601268
Target:  5'- cUCGGAacGAGUCGGGGaa-GGgCGCGAAa -3'
miRNA:   3'- -GGUCU--UUCGGCCCCgcgCCgGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.