miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9610 5' -55.5 NC_002577.1 + 41224 1.09 0.003452
Target:  5'- uGCGCGAUACACUGCGCGGCACACUCUc -3'
miRNA:   3'- -CGCGCUAUGUGACGCGCCGUGUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 88135 0.77 0.378823
Target:  5'- gGCGCGAUGCAUU-CGCGGCuguGCUCg -3'
miRNA:   3'- -CGCGCUAUGUGAcGCGCCGug-UGAGa -5'
9610 5' -55.5 NC_002577.1 + 93549 0.77 0.386278
Target:  5'- cGCGUGGUGCgGCUGCGCGgagaaauGCACAUUCc -3'
miRNA:   3'- -CGCGCUAUG-UGACGCGC-------CGUGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 36295 0.75 0.457536
Target:  5'- aCGaCGAUGCACaaUGCGCGGCGCAUcgCa -3'
miRNA:   3'- cGC-GCUAUGUG--ACGCGCCGUGUGa-Ga -5'
9610 5' -55.5 NC_002577.1 + 44155 0.75 0.485666
Target:  5'- cGCGCG-UACGCUGCuCGGCAgaGCUCc -3'
miRNA:   3'- -CGCGCuAUGUGACGcGCCGUg-UGAGa -5'
9610 5' -55.5 NC_002577.1 + 16689 0.72 0.666175
Target:  5'- cGCGCGGUucaguagucGCGCUGCGCaauggucggGGCAaccCGCUCc -3'
miRNA:   3'- -CGCGCUA---------UGUGACGCG---------CCGU---GUGAGa -5'
9610 5' -55.5 NC_002577.1 + 102462 0.71 0.696585
Target:  5'- gGCGCGcaAUGCGC-GCGCGGUagggccucguAUACUCUu -3'
miRNA:   3'- -CGCGC--UAUGUGaCGCGCCG----------UGUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 33124 0.69 0.793049
Target:  5'- cCGCG-UGCGCUGCGagGGCAUAC-Cg -3'
miRNA:   3'- cGCGCuAUGUGACGCg-CCGUGUGaGa -5'
9610 5' -55.5 NC_002577.1 + 141674 0.69 0.802046
Target:  5'- -aGCGAUGCgaACUGCGgGGaACGCUUUc -3'
miRNA:   3'- cgCGCUAUG--UGACGCgCCgUGUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 75990 0.69 0.808253
Target:  5'- gGCGCGAUuuuaggcaggugggACGCaGCGCGcuuuaCGCACUCa -3'
miRNA:   3'- -CGCGCUA--------------UGUGaCGCGCc----GUGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 41065 0.69 0.81089
Target:  5'- uGCGCGAUACACUGCGa-GCgu-UUCg -3'
miRNA:   3'- -CGCGCUAUGUGACGCgcCGuguGAGa -5'
9610 5' -55.5 NC_002577.1 + 7826 0.69 0.81957
Target:  5'- gGCGCuucUGCGuCUGCGCGGCGgACa-- -3'
miRNA:   3'- -CGCGcu-AUGU-GACGCGCCGUgUGaga -5'
9610 5' -55.5 NC_002577.1 + 125788 0.69 0.819571
Target:  5'- gGCGCuucUGCGuCUGCGCGGCGgACa-- -3'
miRNA:   3'- -CGCGcu-AUGU-GACGCGCCGUgUGaga -5'
9610 5' -55.5 NC_002577.1 + 130585 0.69 0.828081
Target:  5'- aCGCGAUGCGCUcCGCaGCGCcUUCg -3'
miRNA:   3'- cGCGCUAUGUGAcGCGcCGUGuGAGa -5'
9610 5' -55.5 NC_002577.1 + 155664 0.69 0.828081
Target:  5'- -aGCGAUGCgaACUGCGgGGaACGCUUc -3'
miRNA:   3'- cgCGCUAUG--UGACGCgCCgUGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 3028 0.69 0.828081
Target:  5'- aCGCGAUGCGCUcCGCaGCGCcUUCg -3'
miRNA:   3'- cGCGCUAUGUGAcGCGcCGUGuGAGa -5'
9610 5' -55.5 NC_002577.1 + 133523 0.68 0.836413
Target:  5'- aCGCGcaGCAUUGCGCGGaCACAgUg- -3'
miRNA:   3'- cGCGCuaUGUGACGCGCC-GUGUgAga -5'
9610 5' -55.5 NC_002577.1 + 90 0.68 0.836413
Target:  5'- aCGCGcaGCAUUGCGCGGaCACAgUg- -3'
miRNA:   3'- cGCGCuaUGUGACGCGCC-GUGUgAga -5'
9610 5' -55.5 NC_002577.1 + 68131 0.68 0.843754
Target:  5'- cCGCGGacuCGCUgagcagauggcgaGCGUGGUACGCUCg -3'
miRNA:   3'- cGCGCUau-GUGA-------------CGCGCCGUGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 101014 0.68 0.852514
Target:  5'- aGCGaCGAUACucaauggGCGCGGC-CGCUg- -3'
miRNA:   3'- -CGC-GCUAUGuga----CGCGCCGuGUGAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.