miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9610 5' -55.5 NC_002577.1 + 102462 0.71 0.696585
Target:  5'- gGCGCGcaAUGCGC-GCGCGGUagggccucguAUACUCUu -3'
miRNA:   3'- -CGCGC--UAUGUGaCGCGCCG----------UGUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 8846 0.67 0.895836
Target:  5'- cGCGCGcacCGCgggccucgGCGCGGUACGUUCUc -3'
miRNA:   3'- -CGCGCuauGUGa-------CGCGCCGUGUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 7952 0.68 0.852514
Target:  5'- aGCGCGGaGCGCggGCGCgGGCAgggaguuaACUCg -3'
miRNA:   3'- -CGCGCUaUGUGa-CGCG-CCGUg-------UGAGa -5'
9610 5' -55.5 NC_002577.1 + 68131 0.68 0.843754
Target:  5'- cCGCGGacuCGCUgagcagauggcgaGCGUGGUACGCUCg -3'
miRNA:   3'- cGCGCUau-GUGA-------------CGCGCCGUGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 3028 0.69 0.828081
Target:  5'- aCGCGAUGCGCUcCGCaGCGCcUUCg -3'
miRNA:   3'- cGCGCUAUGUGAcGCGcCGUGuGAGa -5'
9610 5' -55.5 NC_002577.1 + 155664 0.69 0.828081
Target:  5'- -aGCGAUGCgaACUGCGgGGaACGCUUc -3'
miRNA:   3'- cgCGCUAUG--UGACGCgCCgUGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 92176 0.66 0.925682
Target:  5'- uGCGCGAacUGgUGCGUGGagacCGCUCUg -3'
miRNA:   3'- -CGCGCUauGUgACGCGCCgu--GUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 95344 0.66 0.914453
Target:  5'- aGCGCGAcauaACACuaaaUGgGCGGCgcgACAUUCg -3'
miRNA:   3'- -CGCGCUa---UGUG----ACgCGCCG---UGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 160716 0.67 0.902276
Target:  5'- gGCGgaGAU-CGCUcGCGUGGCgaGCACUCc -3'
miRNA:   3'- -CGCg-CUAuGUGA-CGCGCCG--UGUGAGa -5'
9610 5' -55.5 NC_002577.1 + 1319 0.67 0.875151
Target:  5'- cGCGCGA-GCGCaUGCGC-GCACAUcCg -3'
miRNA:   3'- -CGCGCUaUGUG-ACGCGcCGUGUGaGa -5'
9610 5' -55.5 NC_002577.1 + 90 0.68 0.836413
Target:  5'- aCGCGcaGCAUUGCGCGGaCACAgUg- -3'
miRNA:   3'- cGCGCuaUGUGACGCGCC-GUGUgAga -5'
9610 5' -55.5 NC_002577.1 + 33124 0.69 0.793049
Target:  5'- cCGCG-UGCGCUGCGagGGCAUAC-Cg -3'
miRNA:   3'- cGCGCuAUGUGACGCg-CCGUGUGaGa -5'
9610 5' -55.5 NC_002577.1 + 87340 0.67 0.908482
Target:  5'- cGCGCGAgccCAaUGCGCuGGCAUcUUCUg -3'
miRNA:   3'- -CGCGCUau-GUgACGCG-CCGUGuGAGA- -5'
9610 5' -55.5 NC_002577.1 + 41065 0.69 0.81089
Target:  5'- uGCGCGAUACACUGCGa-GCgu-UUCg -3'
miRNA:   3'- -CGCGCUAUGUGACGCgcCGuguGAGa -5'
9610 5' -55.5 NC_002577.1 + 133995 0.68 0.860267
Target:  5'- cGCGCGcAUGCucgcaaaugucgACUGCGCGcauGCGCGCa-- -3'
miRNA:   3'- -CGCGC-UAUG------------UGACGCGC---CGUGUGaga -5'
9610 5' -55.5 NC_002577.1 + 79419 0.66 0.913867
Target:  5'- aGCGCGAgcaGCACUaucucggGCgGCGGCAaacccCUCUg -3'
miRNA:   3'- -CGCGCUa--UGUGA-------CG-CGCCGUgu---GAGA- -5'
9610 5' -55.5 NC_002577.1 + 7826 0.69 0.81957
Target:  5'- gGCGCuucUGCGuCUGCGCGGCGgACa-- -3'
miRNA:   3'- -CGCGcu-AUGU-GACGCGCCGUgUGaga -5'
9610 5' -55.5 NC_002577.1 + 36295 0.75 0.457536
Target:  5'- aCGaCGAUGCACaaUGCGCGGCGCAUcgCa -3'
miRNA:   3'- cGC-GCUAUGUG--ACGCGCCGUGUGa-Ga -5'
9610 5' -55.5 NC_002577.1 + 141674 0.69 0.802046
Target:  5'- -aGCGAUGCgaACUGCGgGGaACGCUUUc -3'
miRNA:   3'- cgCGCUAUG--UGACGCgCCgUGUGAGA- -5'
9610 5' -55.5 NC_002577.1 + 75990 0.69 0.808253
Target:  5'- gGCGCGAUuuuaggcaggugggACGCaGCGCGcuuuaCGCACUCa -3'
miRNA:   3'- -CGCGCUA--------------UGUGaCGCGCc----GUGUGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.