Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9610 | 5' | -55.5 | NC_002577.1 | + | 90 | 0.68 | 0.836413 |
Target: 5'- aCGCGcaGCAUUGCGCGGaCACAgUg- -3' miRNA: 3'- cGCGCuaUGUGACGCGCC-GUGUgAga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 1319 | 0.67 | 0.875151 |
Target: 5'- cGCGCGA-GCGCaUGCGC-GCACAUcCg -3' miRNA: 3'- -CGCGCUaUGUG-ACGCGcCGUGUGaGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 3028 | 0.69 | 0.828081 |
Target: 5'- aCGCGAUGCGCUcCGCaGCGCcUUCg -3' miRNA: 3'- cGCGCUAUGUGAcGCGcCGUGuGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 7826 | 0.69 | 0.81957 |
Target: 5'- gGCGCuucUGCGuCUGCGCGGCGgACa-- -3' miRNA: 3'- -CGCGcu-AUGU-GACGCGCCGUgUGaga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 7952 | 0.68 | 0.852514 |
Target: 5'- aGCGCGGaGCGCggGCGCgGGCAgggaguuaACUCg -3' miRNA: 3'- -CGCGCUaUGUGa-CGCG-CCGUg-------UGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 8846 | 0.67 | 0.895836 |
Target: 5'- cGCGCGcacCGCgggccucgGCGCGGUACGUUCUc -3' miRNA: 3'- -CGCGCuauGUGa-------CGCGCCGUGUGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 16689 | 0.72 | 0.666175 |
Target: 5'- cGCGCGGUucaguagucGCGCUGCGCaauggucggGGCAaccCGCUCc -3' miRNA: 3'- -CGCGCUA---------UGUGACGCG---------CCGU---GUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 16934 | 0.66 | 0.935954 |
Target: 5'- uCGUGAgacgcuCGCUGCGCGGCAgggcccaaaugUACUa- -3' miRNA: 3'- cGCGCUau----GUGACGCGCCGU-----------GUGAga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 33124 | 0.69 | 0.793049 |
Target: 5'- cCGCG-UGCGCUGCGagGGCAUAC-Cg -3' miRNA: 3'- cGCGCuAUGUGACGCg-CCGUGUGaGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 36295 | 0.75 | 0.457536 |
Target: 5'- aCGaCGAUGCACaaUGCGCGGCGCAUcgCa -3' miRNA: 3'- cGC-GCUAUGUG--ACGCGCCGUGUGa-Ga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 41065 | 0.69 | 0.81089 |
Target: 5'- uGCGCGAUACACUGCGa-GCgu-UUCg -3' miRNA: 3'- -CGCGCUAUGUGACGCgcCGuguGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 41224 | 1.09 | 0.003452 |
Target: 5'- uGCGCGAUACACUGCGCGGCACACUCUc -3' miRNA: 3'- -CGCGCUAUGUGACGCGCCGUGUGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 44155 | 0.75 | 0.485666 |
Target: 5'- cGCGCG-UACGCUGCuCGGCAgaGCUCc -3' miRNA: 3'- -CGCGCuAUGUGACGcGCCGUg-UGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 44813 | 0.67 | 0.908482 |
Target: 5'- aGCGaCGAaaauUACGCUGUGCGGCcgugGCUg- -3' miRNA: 3'- -CGC-GCU----AUGUGACGCGCCGug--UGAga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 68131 | 0.68 | 0.843754 |
Target: 5'- cCGCGGacuCGCUgagcagauggcgaGCGUGGUACGCUCg -3' miRNA: 3'- cGCGCUau-GUGA-------------CGCGCCGUGUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 72416 | 0.67 | 0.907872 |
Target: 5'- uUGCGAcccgaugUGCugUGCGCGGauaGCGCa-- -3' miRNA: 3'- cGCGCU-------AUGugACGCGCCg--UGUGaga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 75990 | 0.69 | 0.808253 |
Target: 5'- gGCGCGAUuuuaggcaggugggACGCaGCGCGcuuuaCGCACUCa -3' miRNA: 3'- -CGCGCUA--------------UGUGaCGCGCc----GUGUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 79419 | 0.66 | 0.913867 |
Target: 5'- aGCGCGAgcaGCACUaucucggGCgGCGGCAaacccCUCUg -3' miRNA: 3'- -CGCGCUa--UGUGA-------CG-CGCCGUgu---GAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 87340 | 0.67 | 0.908482 |
Target: 5'- cGCGCGAgccCAaUGCGCuGGCAUcUUCUg -3' miRNA: 3'- -CGCGCUau-GUgACGCG-CCGUGuGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 88135 | 0.77 | 0.378823 |
Target: 5'- gGCGCGAUGCAUU-CGCGGCuguGCUCg -3' miRNA: 3'- -CGCGCUAUGUGAcGCGCCGug-UGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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