miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9611 3' -56.2 NC_002577.1 + 44553 1.11 0.002417
Target:  5'- cGACAUCCAACCCGACGAGGAGCCUCCc -3'
miRNA:   3'- -CUGUAGGUUGGGCUGCUCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 158088 0.74 0.491199
Target:  5'- cGACGUgCGGCCCGGCuucGAGGuGCCUUUc -3'
miRNA:   3'- -CUGUAgGUUGGGCUG---CUCCuCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 139250 0.74 0.491199
Target:  5'- cGACGUgCGGCCCGGCuucGAGGuGCCUUUc -3'
miRNA:   3'- -CUGUAgGUUGGGCUG---CUCCuCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 83891 0.74 0.519893
Target:  5'- uACGUCCuGCCUccCGAGGAGgCUCCa -3'
miRNA:   3'- cUGUAGGuUGGGcuGCUCCUCgGAGG- -5'
9611 3' -56.2 NC_002577.1 + 132128 0.73 0.58907
Target:  5'- aACAggccCUAACCCuGACGGGGAgggggaacGCCUCCu -3'
miRNA:   3'- cUGUa---GGUUGGG-CUGCUCCU--------CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 1486 0.73 0.58907
Target:  5'- aACAggccCUAACCCuGACGGGGAgggggaacGCCUCCu -3'
miRNA:   3'- cUGUa---GGUUGGG-CUGCUCCU--------CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 43380 0.72 0.619297
Target:  5'- gGACAuuuggccauguUCCAGCCCGuCGGGGAGCa--- -3'
miRNA:   3'- -CUGU-----------AGGUUGGGCuGCUCCUCGgagg -5'
9611 3' -56.2 NC_002577.1 + 122043 0.7 0.709638
Target:  5'- cGGCGUCCGAUCCGGgaucgcuccCGAcGGGGCuCUCg -3'
miRNA:   3'- -CUGUAGGUUGGGCU---------GCU-CCUCG-GAGg -5'
9611 3' -56.2 NC_002577.1 + 11571 0.7 0.709638
Target:  5'- cGGCGUCCGAUCCGGgaucgcuccCGAcGGGGCuCUCg -3'
miRNA:   3'- -CUGUAGGUUGGGCU---------GCU-CCUCG-GAGg -5'
9611 3' -56.2 NC_002577.1 + 149395 0.7 0.757031
Target:  5'- cAUGUCCAGCUCGGaaaaaacucguaaUGAGGAcGCCUCUc -3'
miRNA:   3'- cUGUAGGUUGGGCU-------------GCUCCU-CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 101536 0.69 0.776612
Target:  5'- cGGCAUCUacgucaaauggGACCCGcACaGAugcGGAGCCUUCg -3'
miRNA:   3'- -CUGUAGG-----------UUGGGC-UG-CU---CCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 111800 0.69 0.789363
Target:  5'- gGGCAUCCAGacgcuuuauaaucaCCGACGAGGGuucGCaaaUCCc -3'
miRNA:   3'- -CUGUAGGUUg-------------GGCUGCUCCU---CGg--AGG- -5'
9611 3' -56.2 NC_002577.1 + 158203 0.68 0.820852
Target:  5'- --aAUCCGgaACCCGGCG-GGAcGCC-CCa -3'
miRNA:   3'- cugUAGGU--UGGGCUGCuCCU-CGGaGG- -5'
9611 3' -56.2 NC_002577.1 + 139135 0.68 0.820852
Target:  5'- --aAUCCGgaACCCGGCG-GGAcGCC-CCa -3'
miRNA:   3'- cugUAGGU--UGGGCUGCuCCU-CGGaGG- -5'
9611 3' -56.2 NC_002577.1 + 22986 0.68 0.820852
Target:  5'- uGCGUgCGGCCCGaACGucuGAGCuCUCCa -3'
miRNA:   3'- cUGUAgGUUGGGC-UGCuc-CUCG-GAGG- -5'
9611 3' -56.2 NC_002577.1 + 49266 0.68 0.824223
Target:  5'- aGACGcguauguuuUCCGACCCGacgccaauaaaugguGCGAGcGGUCUCCc -3'
miRNA:   3'- -CUGU---------AGGUUGGGC---------------UGCUCcUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 21914 0.68 0.82923
Target:  5'- uGCA-CCgAACCCGAguuCGGGGA-CCUCCu -3'
miRNA:   3'- cUGUaGG-UUGGGCU---GCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 136385 0.68 0.837433
Target:  5'- --gGUUCGACCCGAacCGGGGAGgaCUCUc -3'
miRNA:   3'- cugUAGGUUGGGCU--GCUCCUCg-GAGG- -5'
9611 3' -56.2 NC_002577.1 + 160952 0.68 0.837433
Target:  5'- --gGUUCGACCCGAacCGGGGAGgaCUCUc -3'
miRNA:   3'- cugUAGGUUGGGCU--GCUCCUCg-GAGG- -5'
9611 3' -56.2 NC_002577.1 + 78117 0.68 0.853287
Target:  5'- uGACGUCgucaCAGCCCG-CGGGGAcgcuGCUUCg -3'
miRNA:   3'- -CUGUAG----GUUGGGCuGCUCCU----CGGAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.