miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9611 3' -56.2 NC_002577.1 + 1486 0.73 0.58907
Target:  5'- aACAggccCUAACCCuGACGGGGAgggggaacGCCUCCu -3'
miRNA:   3'- cUGUa---GGUUGGG-CUGCUCCU--------CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 5541 0.67 0.882605
Target:  5'- uGGCGgguaaUAGCCgGACGAcGGAGUCUCg -3'
miRNA:   3'- -CUGUag---GUUGGgCUGCU-CCUCGGAGg -5'
9611 3' -56.2 NC_002577.1 + 7071 0.67 0.889405
Target:  5'- gGGCG-CCGAgacgUCCGAUGGGGuuccAGCUUCCg -3'
miRNA:   3'- -CUGUaGGUU----GGGCUGCUCC----UCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 11469 0.66 0.914363
Target:  5'- cACAaccUCCucCCCGGCGGccucGGAcggcGCCUCCc -3'
miRNA:   3'- cUGU---AGGuuGGGCUGCU----CCU----CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 11571 0.7 0.709638
Target:  5'- cGGCGUCCGAUCCGGgaucgcuccCGAcGGGGCuCUCg -3'
miRNA:   3'- -CUGUAGGUUGGGCU---------GCU-CCUCG-GAGg -5'
9611 3' -56.2 NC_002577.1 + 20232 0.67 0.86836
Target:  5'- aACGUCacugcuCAGCCCG-CGuGGAcaauGCCUCCu -3'
miRNA:   3'- cUGUAG------GUUGGGCuGCuCCU----CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 21914 0.68 0.82923
Target:  5'- uGCA-CCgAACCCGAguuCGGGGA-CCUCCu -3'
miRNA:   3'- cUGUaGG-UUGGGCU---GCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 22986 0.68 0.820852
Target:  5'- uGCGUgCGGCCCGaACGucuGAGCuCUCCa -3'
miRNA:   3'- cUGUAgGUUGGGC-UGCuc-CUCG-GAGG- -5'
9611 3' -56.2 NC_002577.1 + 23157 0.67 0.875588
Target:  5'- uAUAUCCcaauuGCCCGGUGAGGA-CCUCUu -3'
miRNA:   3'- cUGUAGGu----UGGGCUGCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 23562 0.67 0.860924
Target:  5'- -cUAUCCGGCCCGACGccugcauaGAGCgCUCg -3'
miRNA:   3'- cuGUAGGUUGGGCUGCuc------CUCG-GAGg -5'
9611 3' -56.2 NC_002577.1 + 27566 0.66 0.914363
Target:  5'- -cCGUCCGuuuuuaguaGCCCcgGACGGGGAGCacaUCg -3'
miRNA:   3'- cuGUAGGU---------UGGG--CUGCUCCUCGg--AGg -5'
9611 3' -56.2 NC_002577.1 + 43380 0.72 0.619297
Target:  5'- gGACAuuuggccauguUCCAGCCCGuCGGGGAGCa--- -3'
miRNA:   3'- -CUGU-----------AGGUUGGGCuGCUCCUCGgagg -5'
9611 3' -56.2 NC_002577.1 + 44553 1.11 0.002417
Target:  5'- cGACAUCCAACCCGACGAGGAGCCUCCc -3'
miRNA:   3'- -CUGUAGGUUGGGCUGCUCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 49266 0.68 0.824223
Target:  5'- aGACGcguauguuuUCCGACCCGacgccaauaaaugguGCGAGcGGUCUCCc -3'
miRNA:   3'- -CUGU---------AGGUUGGGC---------------UGCUCcUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 58005 0.66 0.930663
Target:  5'- aGCGUUCAcgagGCCCGccaGGGcGGGCCUCg -3'
miRNA:   3'- cUGUAGGU----UGGGCug-CUC-CUCGGAGg -5'
9611 3' -56.2 NC_002577.1 + 78117 0.68 0.853287
Target:  5'- uGACGUCgucaCAGCCCG-CGGGGAcgcuGCUUCg -3'
miRNA:   3'- -CUGUAG----GUUGGGCuGCUCCU----CGGAGg -5'
9611 3' -56.2 NC_002577.1 + 82447 0.68 0.853287
Target:  5'- uGCAUCaaucgAACgCCGGCGucGaGGGCCUCCa -3'
miRNA:   3'- cUGUAGg----UUG-GGCUGCu-C-CUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 83891 0.74 0.519893
Target:  5'- uACGUCCuGCCUccCGAGGAGgCUCCa -3'
miRNA:   3'- cUGUAGGuUGGGcuGCUCCUCgGAGG- -5'
9611 3' -56.2 NC_002577.1 + 101536 0.69 0.776612
Target:  5'- cGGCAUCUacgucaaauggGACCCGcACaGAugcGGAGCCUUCg -3'
miRNA:   3'- -CUGUAGG-----------UUGGGC-UG-CU---CCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 111800 0.69 0.789363
Target:  5'- gGGCAUCCAGacgcuuuauaaucaCCGACGAGGGuucGCaaaUCCc -3'
miRNA:   3'- -CUGUAGGUUg-------------GGCUGCUCCU---CGg--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.