miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9611 3' -56.2 NC_002577.1 + 158088 0.74 0.491199
Target:  5'- cGACGUgCGGCCCGGCuucGAGGuGCCUUUc -3'
miRNA:   3'- -CUGUAgGUUGGGCUG---CUCCuCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 7071 0.67 0.889405
Target:  5'- gGGCG-CCGAgacgUCCGAUGGGGuuccAGCUUCCg -3'
miRNA:   3'- -CUGUaGGUU----GGGCUGCUCC----UCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 144802 0.67 0.86836
Target:  5'- -uUAUCCGACCUGACauuuGGGAGCUgggugUCUa -3'
miRNA:   3'- cuGUAGGUUGGGCUGc---UCCUCGG-----AGG- -5'
9611 3' -56.2 NC_002577.1 + 82447 0.68 0.853287
Target:  5'- uGCAUCaaucgAACgCCGGCGucGaGGGCCUCCa -3'
miRNA:   3'- cUGUAGg----UUG-GGCUGCu-C-CUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 158203 0.68 0.820852
Target:  5'- --aAUCCGgaACCCGGCG-GGAcGCC-CCa -3'
miRNA:   3'- cugUAGGU--UGGGCUGCuCCU-CGGaGG- -5'
9611 3' -56.2 NC_002577.1 + 149395 0.7 0.757031
Target:  5'- cAUGUCCAGCUCGGaaaaaacucguaaUGAGGAcGCCUCUc -3'
miRNA:   3'- cUGUAGGUUGGGCU-------------GCUCCU-CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 27566 0.66 0.914363
Target:  5'- -cCGUCCGuuuuuaguaGCCCcgGACGGGGAGCacaUCg -3'
miRNA:   3'- cuGUAGGU---------UGGG--CUGCUCCUCGg--AGg -5'
9611 3' -56.2 NC_002577.1 + 11469 0.66 0.914363
Target:  5'- cACAaccUCCucCCCGGCGGccucGGAcggcGCCUCCc -3'
miRNA:   3'- cUGU---AGGuuGGGCUGCU----CCU----CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 147620 0.67 0.895984
Target:  5'- cGGCAUCUcuaGAUCUccCGGGGAGUCUCUc -3'
miRNA:   3'- -CUGUAGG---UUGGGcuGCUCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 128073 0.67 0.882605
Target:  5'- uGGCGgguaaUAGCCgGACGAcGGAGUCUCg -3'
miRNA:   3'- -CUGUag---GUUGGgCUGCU-CCUCGGAGg -5'
9611 3' -56.2 NC_002577.1 + 160952 0.68 0.837433
Target:  5'- --gGUUCGACCCGAacCGGGGAGgaCUCUc -3'
miRNA:   3'- cugUAGGUUGGGCU--GCUCCUCg-GAGG- -5'
9611 3' -56.2 NC_002577.1 + 1486 0.73 0.58907
Target:  5'- aACAggccCUAACCCuGACGGGGAgggggaacGCCUCCu -3'
miRNA:   3'- cUGUa---GGUUGGG-CUGCUCCU--------CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 158807 0.67 0.895984
Target:  5'- -gUcgCCGACCCG-CGAGGcaggagcGCCUCa -3'
miRNA:   3'- cuGuaGGUUGGGCuGCUCCu------CGGAGg -5'
9611 3' -56.2 NC_002577.1 + 43380 0.72 0.619297
Target:  5'- gGACAuuuggccauguUCCAGCCCGuCGGGGAGCa--- -3'
miRNA:   3'- -CUGU-----------AGGUUGGGCuGCUCCUCGgagg -5'
9611 3' -56.2 NC_002577.1 + 141156 0.67 0.86836
Target:  5'- gGACGggcugCCGACCgGGCGucGGGGGCacggCCa -3'
miRNA:   3'- -CUGUa----GGUUGGgCUGC--UCCUCGga--GG- -5'
9611 3' -56.2 NC_002577.1 + 139475 0.66 0.901085
Target:  5'- --gGUCCAGCCagcgguaugaaaGGCGGGGAaCCUUCg -3'
miRNA:   3'- cugUAGGUUGGg-----------CUGCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 122043 0.7 0.709638
Target:  5'- cGGCGUCCGAUCCGGgaucgcuccCGAcGGGGCuCUCg -3'
miRNA:   3'- -CUGUAGGUUGGGCU---------GCU-CCUCG-GAGg -5'
9611 3' -56.2 NC_002577.1 + 156135 0.67 0.889405
Target:  5'- -uCcgCCGAacccCCCGACGgcgcgcaucAGGGGUCUCCu -3'
miRNA:   3'- cuGuaGGUU----GGGCUGC---------UCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 136385 0.68 0.837433
Target:  5'- --gGUUCGACCCGAacCGGGGAGgaCUCUc -3'
miRNA:   3'- cugUAGGUUGGGCU--GCUCCUCg-GAGG- -5'
9611 3' -56.2 NC_002577.1 + 78117 0.68 0.853287
Target:  5'- uGACGUCgucaCAGCCCG-CGGGGAcgcuGCUUCg -3'
miRNA:   3'- -CUGUAG----GUUGGGCuGCUCCU----CGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.