miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9614 3' -60.6 NC_002577.1 + 58008 1.11 0.000862
Target:  5'- aACAGCGUUCACGAGGCCCGCCAGGGCg -3'
miRNA:   3'- -UGUCGCAAGUGCUCCGGGCGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 22356 0.77 0.192328
Target:  5'- gGCGGUGUcuaACGAGGUCgGgCCAGGGCg -3'
miRNA:   3'- -UGUCGCAag-UGCUCCGGgC-GGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 10960 0.75 0.243829
Target:  5'- --cGCGUUCGCGGGGgUCGCCGacGGGUg -3'
miRNA:   3'- uguCGCAAGUGCUCCgGGCGGU--CCCG- -5'
9614 3' -60.6 NC_002577.1 + 122654 0.75 0.243829
Target:  5'- --cGCGUUCGCGGGGgUCGCCGacGGGUg -3'
miRNA:   3'- uguCGCAAGUGCUCCgGGCGGU--CCCG- -5'
9614 3' -60.6 NC_002577.1 + 28093 0.74 0.313169
Target:  5'- uAUAGCGcccucuaCACGAGGCCagcaCGCCGGGGg -3'
miRNA:   3'- -UGUCGCaa-----GUGCUCCGG----GCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 57800 0.73 0.349309
Target:  5'- --cGCGacucaaACGAGGCCCGCCcuGGCg -3'
miRNA:   3'- uguCGCaag---UGCUCCGGGCGGucCCG- -5'
9614 3' -60.6 NC_002577.1 + 393 0.72 0.391565
Target:  5'- gGCAGCGUuggugucauguaUCACGgucggggugacuguuAGGCCuCGCC-GGGCc -3'
miRNA:   3'- -UGUCGCA------------AGUGC---------------UCCGG-GCGGuCCCG- -5'
9614 3' -60.6 NC_002577.1 + 133221 0.72 0.391565
Target:  5'- gGCAGCGUuggugucauguaUCACGgucggggugacuguuAGGCCuCGCC-GGGCc -3'
miRNA:   3'- -UGUCGCA------------AGUGC---------------UCCGG-GCGGuCCCG- -5'
9614 3' -60.6 NC_002577.1 + 131844 0.71 0.413065
Target:  5'- gUAGgGUaggCGCGAagguugGGCCCGUUAGGGCu -3'
miRNA:   3'- uGUCgCAa--GUGCU------CCGGGCGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 1776 0.71 0.413065
Target:  5'- gGCAGgGguaggguaggCGCGAagguugGGCCCGUUAGGGCu -3'
miRNA:   3'- -UGUCgCaa--------GUGCU------CCGGGCGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 33275 0.71 0.447521
Target:  5'- -aAG-GUUCGCGAGGCCUGUaccuGGGGUu -3'
miRNA:   3'- ugUCgCAAGUGCUCCGGGCGg---UCCCG- -5'
9614 3' -60.6 NC_002577.1 + 134880 0.7 0.49273
Target:  5'- uACGGCGaaCGCGcccgcGGGCUCGCCGGcGCu -3'
miRNA:   3'- -UGUCGCaaGUGC-----UCCGGGCGGUCcCG- -5'
9614 3' -60.6 NC_002577.1 + 162447 0.7 0.49273
Target:  5'- uACGGCGaaCGCGcccgcGGGCUCGCCGGcGCu -3'
miRNA:   3'- -UGUCGCaaGUGC-----UCCGGGCGGUCcCG- -5'
9614 3' -60.6 NC_002577.1 + 83066 0.7 0.511398
Target:  5'- -aAGCaUUUACGAGGCCCGCCcacuuuAGcGCg -3'
miRNA:   3'- ugUCGcAAGUGCUCCGGGCGG------UCcCG- -5'
9614 3' -60.6 NC_002577.1 + 11666 0.7 0.511398
Target:  5'- -aGGCGccgUC-CGAGG-CCGCCGGGGa -3'
miRNA:   3'- ugUCGCa--AGuGCUCCgGGCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 121947 0.7 0.511398
Target:  5'- -aGGCGccgUC-CGAGG-CCGCCGGGGa -3'
miRNA:   3'- ugUCGCa--AGuGCUCCgGGCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 9312 0.69 0.520841
Target:  5'- cCAGaCGUUUGCGAcgcuaGGCUgGcCCGGGGCg -3'
miRNA:   3'- uGUC-GCAAGUGCU-----CCGGgC-GGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 163303 0.69 0.520842
Target:  5'- cGCAuGCGcgCACG-GGUCCGCUAcgcauuucGGGCg -3'
miRNA:   3'- -UGU-CGCaaGUGCuCCGGGCGGU--------CCCG- -5'
9614 3' -60.6 NC_002577.1 + 124302 0.69 0.520842
Target:  5'- cCAGaCGUUUGCGAcgcuaGGCUgGcCCGGGGCg -3'
miRNA:   3'- uGUC-GCAAGUGCU-----CCGGgC-GGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 134024 0.69 0.530352
Target:  5'- cGCAuGCGcgCACG-GGUCCGCUAcgcauuuccGGGCg -3'
miRNA:   3'- -UGU-CGCaaGUGCuCCGGGCGGU---------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.