miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9614 3' -60.6 NC_002577.1 + 393 0.72 0.391565
Target:  5'- gGCAGCGUuggugucauguaUCACGgucggggugacuguuAGGCCuCGCC-GGGCc -3'
miRNA:   3'- -UGUCGCA------------AGUGC---------------UCCGG-GCGGuCCCG- -5'
9614 3' -60.6 NC_002577.1 + 1571 0.66 0.7066
Target:  5'- -gGGCGUgccgCGgauugaggguCGGGGCCgGCgAGGGUg -3'
miRNA:   3'- ugUCGCAa---GU----------GCUCCGGgCGgUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 1776 0.71 0.413065
Target:  5'- gGCAGgGguaggguaggCGCGAagguugGGCCCGUUAGGGCu -3'
miRNA:   3'- -UGUCgCaa--------GUGCU------CCGGGCGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 3582 0.66 0.744732
Target:  5'- -uGGCGUguccuccuUCggACGAGuGCuuGCCGGGGa -3'
miRNA:   3'- ugUCGCA--------AG--UGCUC-CGggCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 6927 0.68 0.598391
Target:  5'- cCGGUGgaugagUCGCGAuGGCCgGaCGGGGCc -3'
miRNA:   3'- uGUCGCa-----AGUGCU-CCGGgCgGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 7650 0.66 0.716241
Target:  5'- gGCGGCacggCACGGGGCgcucaaCGCaCAGGGg -3'
miRNA:   3'- -UGUCGcaa-GUGCUCCGg-----GCG-GUCCCg -5'
9614 3' -60.6 NC_002577.1 + 9312 0.69 0.520841
Target:  5'- cCAGaCGUUUGCGAcgcuaGGCUgGcCCGGGGCg -3'
miRNA:   3'- uGUC-GCAAGUGCU-----CCGGgC-GGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 10941 0.66 0.754055
Target:  5'- uACcGCGguccCGCGcuuucggacggcGGGCCgGCCAGGGa -3'
miRNA:   3'- -UGuCGCaa--GUGC------------UCCGGgCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 10960 0.75 0.243829
Target:  5'- --cGCGUUCGCGGGGgUCGCCGacGGGUg -3'
miRNA:   3'- uguCGCAAGUGCUCCgGGCGGU--CCCG- -5'
9614 3' -60.6 NC_002577.1 + 11666 0.7 0.511398
Target:  5'- -aGGCGccgUC-CGAGG-CCGCCGGGGa -3'
miRNA:   3'- ugUCGCa--AGuGCUCCgGGCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 22356 0.77 0.192328
Target:  5'- gGCGGUGUcuaACGAGGUCgGgCCAGGGCg -3'
miRNA:   3'- -UGUCGCAag-UGCUCCGGgC-GGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 28093 0.74 0.313169
Target:  5'- uAUAGCGcccucuaCACGAGGCCagcaCGCCGGGGg -3'
miRNA:   3'- -UGUCGCaa-----GUGCUCCGG----GCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 30567 0.69 0.549557
Target:  5'- gGCGGCGgaaaaguaACG-GGCCCGUCGGauuGGCg -3'
miRNA:   3'- -UGUCGCaag-----UGCuCCGGGCGGUC---CCG- -5'
9614 3' -60.6 NC_002577.1 + 33275 0.71 0.447521
Target:  5'- -aAG-GUUCGCGAGGCCUGUaccuGGGGUu -3'
miRNA:   3'- ugUCgCAAGUGCUCCGGGCGg---UCCCG- -5'
9614 3' -60.6 NC_002577.1 + 34887 0.66 0.716241
Target:  5'- -aAGCGUUCAUG-GGCCuCGgCAGaGCc -3'
miRNA:   3'- ugUCGCAAGUGCuCCGG-GCgGUCcCG- -5'
9614 3' -60.6 NC_002577.1 + 38334 0.68 0.627028
Target:  5'- cGCAG-GUucuaauagauucgUCGCccGGCCCGCC-GGGCg -3'
miRNA:   3'- -UGUCgCA-------------AGUGcuCCGGGCGGuCCCG- -5'
9614 3' -60.6 NC_002577.1 + 41926 0.67 0.677352
Target:  5'- -uGGCcgUCugGAGaCCCaCCAGGGCg -3'
miRNA:   3'- ugUCGcaAGugCUCcGGGcGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 44325 0.66 0.716241
Target:  5'- uUAGCGUUCaACGGGuGCCucgggucuucugCGCCcAGGGg -3'
miRNA:   3'- uGUCGCAAG-UGCUC-CGG------------GCGG-UCCCg -5'
9614 3' -60.6 NC_002577.1 + 49683 0.68 0.618129
Target:  5'- cACAGCGgcgagaCGCGcauAGGCgUGCC-GGGCa -3'
miRNA:   3'- -UGUCGCaa----GUGC---UCCGgGCGGuCCCG- -5'
9614 3' -60.6 NC_002577.1 + 57800 0.73 0.349309
Target:  5'- --cGCGacucaaACGAGGCCCGCCcuGGCg -3'
miRNA:   3'- uguCGCaag---UGCUCCGGGCGGucCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.