Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9614 | 3' | -60.6 | NC_002577.1 | + | 122654 | 0.75 | 0.243829 |
Target: 5'- --cGCGUUCGCGGGGgUCGCCGacGGGUg -3' miRNA: 3'- uguCGCAAGUGCUCCgGGCGGU--CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 156913 | 0.67 | 0.647794 |
Target: 5'- -gAGCGUUUcCGAGGgcgggggccCCCGUaccaGGGGCg -3' miRNA: 3'- ugUCGCAAGuGCUCC---------GGGCGg---UCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 41926 | 0.67 | 0.677352 |
Target: 5'- -uGGCcgUCugGAGaCCCaCCAGGGCg -3' miRNA: 3'- ugUCGcaAGugCUCcGGGcGGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 10941 | 0.66 | 0.754055 |
Target: 5'- uACcGCGguccCGCGcuuucggacggcGGGCCgGCCAGGGa -3' miRNA: 3'- -UGuCGCaa--GUGC------------UCCGGgCGGUCCCg -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 131844 | 0.71 | 0.413065 |
Target: 5'- gUAGgGUaggCGCGAagguugGGCCCGUUAGGGCu -3' miRNA: 3'- uGUCgCAa--GUGCU------CCGGGCGGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 33275 | 0.71 | 0.447521 |
Target: 5'- -aAG-GUUCGCGAGGCCUGUaccuGGGGUu -3' miRNA: 3'- ugUCgCAAGUGCUCCGGGCGg---UCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 121947 | 0.7 | 0.511398 |
Target: 5'- -aGGCGccgUC-CGAGG-CCGCCGGGGa -3' miRNA: 3'- ugUCGCa--AGuGCUCCgGGCGGUCCCg -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 9312 | 0.69 | 0.520841 |
Target: 5'- cCAGaCGUUUGCGAcgcuaGGCUgGcCCGGGGCg -3' miRNA: 3'- uGUC-GCAAGUGCU-----CCGGgC-GGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 30567 | 0.69 | 0.549557 |
Target: 5'- gGCGGCGgaaaaguaACG-GGCCCGUCGGauuGGCg -3' miRNA: 3'- -UGUCGCaag-----UGCuCCGGGCGGUC---CCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 38334 | 0.68 | 0.627028 |
Target: 5'- cGCAG-GUucuaauagauucgUCGCccGGCCCGCC-GGGCg -3' miRNA: 3'- -UGUCgCA-------------AGUGcuCCGGGCGGuCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 126687 | 0.68 | 0.598391 |
Target: 5'- cCGGUGgaugagUCGCGAuGGCCgGaCGGGGCc -3' miRNA: 3'- uGUCGCa-----AGUGCU-CCGGgCgGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 138487 | 0.69 | 0.530352 |
Target: 5'- -gAGCGaagggUACGAGGCCgggggagGCCGGGGUa -3' miRNA: 3'- ugUCGCaa---GUGCUCCGGg------CGGUCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 28093 | 0.74 | 0.313169 |
Target: 5'- uAUAGCGcccucuaCACGAGGCCagcaCGCCGGGGg -3' miRNA: 3'- -UGUCGCaa-----GUGCUCCGG----GCGGUCCCg -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 49683 | 0.68 | 0.618129 |
Target: 5'- cACAGCGgcgagaCGCGcauAGGCgUGCC-GGGCa -3' miRNA: 3'- -UGUCGCaa----GUGC---UCCGgGCGGuCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 57800 | 0.73 | 0.349309 |
Target: 5'- --cGCGacucaaACGAGGCCCGCCcuGGCg -3' miRNA: 3'- uguCGCaag---UGCUCCGGGCGGucCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 134024 | 0.69 | 0.530352 |
Target: 5'- cGCAuGCGcgCACG-GGUCCGCUAcgcauuuccGGGCg -3' miRNA: 3'- -UGU-CGCaaGUGCuCCGGGCGGU---------CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 136998 | 0.68 | 0.622083 |
Target: 5'- uCGGCGUcCGCGAgaaGGCgCGCCAcgcguugcagccgucGGGCc -3' miRNA: 3'- uGUCGCAaGUGCU---CCGgGCGGU---------------CCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 157795 | 0.67 | 0.657668 |
Target: 5'- cCGGCGUgCGCGccG-CCGCCGGGcGCg -3' miRNA: 3'- uGUCGCAaGUGCucCgGGCGGUCC-CG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 133221 | 0.72 | 0.391565 |
Target: 5'- gGCAGCGUuggugucauguaUCACGgucggggugacuguuAGGCCuCGCC-GGGCc -3' miRNA: 3'- -UGUCGCA------------AGUGC---------------UCCGG-GCGGuCCCG- -5' |
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9614 | 3' | -60.6 | NC_002577.1 | + | 134880 | 0.7 | 0.49273 |
Target: 5'- uACGGCGaaCGCGcccgcGGGCUCGCCGGcGCu -3' miRNA: 3'- -UGUCGCaaGUGC-----UCCGGGCGGUCcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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