miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9617 3' -57.2 NC_002577.1 + 67084 1.12 0.001571
Target:  5'- uACAGCACCUAUUCGCCCCCGGUAGCCa -3'
miRNA:   3'- -UGUCGUGGAUAAGCGGGGGCCAUCGG- -5'
9617 3' -57.2 NC_002577.1 + 143473 0.74 0.441473
Target:  5'- aACAGCGCa---UCGCCCCgGGUAGaaCCg -3'
miRNA:   3'- -UGUCGUGgauaAGCGGGGgCCAUC--GG- -5'
9617 3' -57.2 NC_002577.1 + 3041 0.73 0.516085
Target:  5'- cGCAGCGCCU--UCGUCCCgGaGUAgagcGCCa -3'
miRNA:   3'- -UGUCGUGGAuaAGCGGGGgC-CAU----CGG- -5'
9617 3' -57.2 NC_002577.1 + 130572 0.73 0.516085
Target:  5'- cGCAGCGCCU--UCGUCCCgGaGUAgagcGCCa -3'
miRNA:   3'- -UGUCGUGGAuaAGCGGGGgC-CAU----CGG- -5'
9617 3' -57.2 NC_002577.1 + 141968 0.72 0.524811
Target:  5'- gGCGuCGCUaggagaaUGUUUGCCCCCGGggAGCCu -3'
miRNA:   3'- -UGUcGUGG-------AUAAGCGGGGGCCa-UCGG- -5'
9617 3' -57.2 NC_002577.1 + 155370 0.72 0.524811
Target:  5'- gGCGuCGCUaggagaaUGUUUGCCCCCGGggAGCCu -3'
miRNA:   3'- -UGUcGUGG-------AUAAGCGGGGGCCa-UCGG- -5'
9617 3' -57.2 NC_002577.1 + 142631 0.72 0.525784
Target:  5'- cCGGCACCg---CGCUCCUGGUAGgUg -3'
miRNA:   3'- uGUCGUGGauaaGCGGGGGCCAUCgG- -5'
9617 3' -57.2 NC_002577.1 + 154705 0.72 0.525784
Target:  5'- cCGGCACCg---CGCUCCUGGUAGgUg -3'
miRNA:   3'- uGUCGUGGauaaGCGGGGGCCAUCgG- -5'
9617 3' -57.2 NC_002577.1 + 38549 0.71 0.585215
Target:  5'- cGCAGCGC--AUUUGUCgCCCGGcgGGCCg -3'
miRNA:   3'- -UGUCGUGgaUAAGCGG-GGGCCa-UCGG- -5'
9617 3' -57.2 NC_002577.1 + 87080 0.71 0.615459
Target:  5'- aGCAGCAUCgagagCGCCCCCGccgucauuuaaGUcGCCa -3'
miRNA:   3'- -UGUCGUGGauaa-GCGGGGGC-----------CAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 122557 0.71 0.615459
Target:  5'- gGCGGCGuuUcua-GCCCCCGGcgcgGGCCg -3'
miRNA:   3'- -UGUCGUggAuaagCGGGGGCCa---UCGG- -5'
9617 3' -57.2 NC_002577.1 + 11056 0.71 0.615459
Target:  5'- gGCGGCGuuUcua-GCCCCCGGcgcgGGCCg -3'
miRNA:   3'- -UGUCGUggAuaagCGGGGGCCa---UCGG- -5'
9617 3' -57.2 NC_002577.1 + 154798 0.71 0.615459
Target:  5'- cGCAGCGCCUAUU-GCCCC--GUcGCCu -3'
miRNA:   3'- -UGUCGUGGAUAAgCGGGGgcCAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 142538 0.71 0.615459
Target:  5'- cGCAGCGCCUAUU-GCCCC--GUcGCCu -3'
miRNA:   3'- -UGUCGUGGAUAAgCGGGGgcCAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 103531 0.71 0.625575
Target:  5'- cUAGCGgCg---CGCCCCCGGUA-CCa -3'
miRNA:   3'- uGUCGUgGauaaGCGGGGGCCAUcGG- -5'
9617 3' -57.2 NC_002577.1 + 42410 0.7 0.686097
Target:  5'- uACAGCACUcAUUCGa-CCgGGUAGCg -3'
miRNA:   3'- -UGUCGUGGaUAAGCggGGgCCAUCGg -5'
9617 3' -57.2 NC_002577.1 + 160921 0.69 0.706011
Target:  5'- cCGGCGCCcgGcUCGcCCCCCGGgGGaCCc -3'
miRNA:   3'- uGUCGUGGa-UaAGC-GGGGGCCaUC-GG- -5'
9617 3' -57.2 NC_002577.1 + 136416 0.69 0.706011
Target:  5'- cCGGCGCCcgGcUCGcCCCCCGGgGGaCCc -3'
miRNA:   3'- uGUCGUGGa-UaAGC-GGGGGCCaUC-GG- -5'
9617 3' -57.2 NC_002577.1 + 140200 0.69 0.722748
Target:  5'- gGCGGCAgacguacuggaagcCCg---CGCCCCUGGUacgggGGCCc -3'
miRNA:   3'- -UGUCGU--------------GGauaaGCGGGGGCCA-----UCGG- -5'
9617 3' -57.2 NC_002577.1 + 157138 0.69 0.722748
Target:  5'- gGCGGCAgacguacuggaagcCCg---CGCCCCUGGUacgggGGCCc -3'
miRNA:   3'- -UGUCGU--------------GGauaaGCGGGGGCCA-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.