miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9617 3' -57.2 NC_002577.1 + 3041 0.73 0.516085
Target:  5'- cGCAGCGCCU--UCGUCCCgGaGUAgagcGCCa -3'
miRNA:   3'- -UGUCGUGGAuaAGCGGGGgC-CAU----CGG- -5'
9617 3' -57.2 NC_002577.1 + 4997 0.66 0.865098
Target:  5'- -gGGCGCCguccucaUGCCCCCcuccgagGGUAGCa -3'
miRNA:   3'- ugUCGUGGauaa---GCGGGGG-------CCAUCGg -5'
9617 3' -57.2 NC_002577.1 + 10819 0.67 0.842699
Target:  5'- gACGGCGCgCga-UCGCuUCCCGGccGCCu -3'
miRNA:   3'- -UGUCGUG-GauaAGCG-GGGGCCauCGG- -5'
9617 3' -57.2 NC_002577.1 + 11056 0.71 0.615459
Target:  5'- gGCGGCGuuUcua-GCCCCCGGcgcgGGCCg -3'
miRNA:   3'- -UGUCGUggAuaagCGGGGGCCa---UCGG- -5'
9617 3' -57.2 NC_002577.1 + 20362 0.67 0.809262
Target:  5'- aGCGcGCACUUAUUagcCGCCUCCGGgauCCg -3'
miRNA:   3'- -UGU-CGUGGAUAA---GCGGGGGCCaucGG- -5'
9617 3' -57.2 NC_002577.1 + 38334 0.66 0.88025
Target:  5'- cGCAGguUCUAauagaUUCGUCgCCCGGcccGCCg -3'
miRNA:   3'- -UGUCguGGAU-----AAGCGG-GGGCCau-CGG- -5'
9617 3' -57.2 NC_002577.1 + 38549 0.71 0.585215
Target:  5'- cGCAGCGC--AUUUGUCgCCCGGcgGGCCg -3'
miRNA:   3'- -UGUCGUGgaUAAGCGG-GGGCCa-UCGG- -5'
9617 3' -57.2 NC_002577.1 + 42410 0.7 0.686097
Target:  5'- uACAGCACUcAUUCGa-CCgGGUAGCg -3'
miRNA:   3'- -UGUCGUGGaUAAGCggGGgCCAUCGg -5'
9617 3' -57.2 NC_002577.1 + 67084 1.12 0.001571
Target:  5'- uACAGCACCUAUUCGCCCCCGGUAGCCa -3'
miRNA:   3'- -UGUCGUGGAUAAGCGGGGGCCAUCGG- -5'
9617 3' -57.2 NC_002577.1 + 68709 0.67 0.826326
Target:  5'- aACAuGCGCUguUGUUUGCCCUCGGUucauGUg -3'
miRNA:   3'- -UGU-CGUGG--AUAAGCGGGGGCCAu---CGg -5'
9617 3' -57.2 NC_002577.1 + 77609 0.66 0.850608
Target:  5'- aACGGCGgCagGUUCgagaaagcaGCCCUCGG-AGCCg -3'
miRNA:   3'- -UGUCGUgGa-UAAG---------CGGGGGCCaUCGG- -5'
9617 3' -57.2 NC_002577.1 + 87080 0.71 0.615459
Target:  5'- aGCAGCAUCgagagCGCCCCCGccgucauuuaaGUcGCCa -3'
miRNA:   3'- -UGUCGUGGauaa-GCGGGGGC-----------CAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 88850 0.66 0.87315
Target:  5'- --cGCGCCUGUU-GCCCgcaugCGGaUAGCCu -3'
miRNA:   3'- uguCGUGGAUAAgCGGGg----GCC-AUCGG- -5'
9617 3' -57.2 NC_002577.1 + 93662 0.67 0.826326
Target:  5'- gGCAGCgggGCUggGUUCGCCguaaaUCGGUGGCa -3'
miRNA:   3'- -UGUCG---UGGa-UAAGCGGg----GGCCAUCGg -5'
9617 3' -57.2 NC_002577.1 + 97160 0.66 0.887133
Target:  5'- gACAGCAUCaa-UCGCCgaCaCGGUcGCCa -3'
miRNA:   3'- -UGUCGUGGauaAGCGGg-G-GCCAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 98317 0.66 0.878847
Target:  5'- gACAGCGCauaaacccacgAUagGCCCCUuuaGUAGCCa -3'
miRNA:   3'- -UGUCGUGga---------UAagCGGGGGc--CAUCGG- -5'
9617 3' -57.2 NC_002577.1 + 100689 0.66 0.88025
Target:  5'- --cGCGCC-GUUCGCCuCCaCGGacGCCa -3'
miRNA:   3'- uguCGUGGaUAAGCGG-GG-GCCauCGG- -5'
9617 3' -57.2 NC_002577.1 + 103531 0.71 0.625575
Target:  5'- cUAGCGgCg---CGCCCCCGGUA-CCa -3'
miRNA:   3'- uGUCGUgGauaaGCGGGGGCCAUcGG- -5'
9617 3' -57.2 NC_002577.1 + 112120 0.67 0.826326
Target:  5'- cACGGCaaacGCUUGUUUGCCUuuGGacauGCCu -3'
miRNA:   3'- -UGUCG----UGGAUAAGCGGGggCCau--CGG- -5'
9617 3' -57.2 NC_002577.1 + 116830 0.67 0.809262
Target:  5'- uCAGUACaCUGUUUauuggGCCCCCGGcguGCg -3'
miRNA:   3'- uGUCGUG-GAUAAG-----CGGGGGCCau-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.