miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9617 3' -57.2 NC_002577.1 + 155370 0.72 0.524811
Target:  5'- gGCGuCGCUaggagaaUGUUUGCCCCCGGggAGCCu -3'
miRNA:   3'- -UGUcGUGG-------AUAAGCGGGGGCCa-UCGG- -5'
9617 3' -57.2 NC_002577.1 + 77609 0.66 0.850608
Target:  5'- aACGGCGgCagGUUCgagaaagcaGCCCUCGG-AGCCg -3'
miRNA:   3'- -UGUCGUgGa-UAAG---------CGGGGGCCaUCGG- -5'
9617 3' -57.2 NC_002577.1 + 117830 0.66 0.87315
Target:  5'- gGC-GCACCcucagGUUCGCCUacgCCGGUauAGCg -3'
miRNA:   3'- -UGuCGUGGa----UAAGCGGG---GGCCA--UCGg -5'
9617 3' -57.2 NC_002577.1 + 97160 0.66 0.887133
Target:  5'- gACAGCAUCaa-UCGCCgaCaCGGUcGCCa -3'
miRNA:   3'- -UGUCGUGGauaAGCGGg-G-GCCAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 87080 0.71 0.615459
Target:  5'- aGCAGCAUCgagagCGCCCCCGccgucauuuaaGUcGCCa -3'
miRNA:   3'- -UGUCGUGGauaa-GCGGGGGC-----------CAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 103531 0.71 0.625575
Target:  5'- cUAGCGgCg---CGCCCCCGGUA-CCa -3'
miRNA:   3'- uGUCGUgGauaaGCGGGGGCCAUcGG- -5'
9617 3' -57.2 NC_002577.1 + 160921 0.69 0.706011
Target:  5'- cCGGCGCCcgGcUCGcCCCCCGGgGGaCCc -3'
miRNA:   3'- uGUCGUGGa-UaAGC-GGGGGCCaUC-GG- -5'
9617 3' -57.2 NC_002577.1 + 140200 0.69 0.722748
Target:  5'- gGCGGCAgacguacuggaagcCCg---CGCCCCUGGUacgggGGCCc -3'
miRNA:   3'- -UGUCGU--------------GGauaaGCGGGGGCCA-----UCGG- -5'
9617 3' -57.2 NC_002577.1 + 143473 0.74 0.441473
Target:  5'- aACAGCGCa---UCGCCCCgGGUAGaaCCg -3'
miRNA:   3'- -UGUCGUGgauaAGCGGGGgCCAUC--GG- -5'
9617 3' -57.2 NC_002577.1 + 162339 0.66 0.850608
Target:  5'- gACAGCGCCUAgaaGa-CCC-GUGGCCu -3'
miRNA:   3'- -UGUCGUGGAUaagCggGGGcCAUCGG- -5'
9617 3' -57.2 NC_002577.1 + 137205 0.67 0.817876
Target:  5'- --cGCuCCUGg-CGCCCCCGaGgAGCCg -3'
miRNA:   3'- uguCGuGGAUaaGCGGGGGC-CaUCGG- -5'
9617 3' -57.2 NC_002577.1 + 159463 0.67 0.809262
Target:  5'- cCAGCGCCgaaAUgcgaCGCCCCuCGGcaucGCCu -3'
miRNA:   3'- uGUCGUGGa--UAa---GCGGGG-GCCau--CGG- -5'
9617 3' -57.2 NC_002577.1 + 154705 0.72 0.525784
Target:  5'- cCGGCACCg---CGCUCCUGGUAGgUg -3'
miRNA:   3'- uGUCGUGGauaaGCGGGGGCCAUCgG- -5'
9617 3' -57.2 NC_002577.1 + 68709 0.67 0.826326
Target:  5'- aACAuGCGCUguUGUUUGCCCUCGGUucauGUg -3'
miRNA:   3'- -UGU-CGUGG--AUAAGCGGGGGCCAu---CGg -5'
9617 3' -57.2 NC_002577.1 + 154798 0.71 0.615459
Target:  5'- cGCAGCGCCUAUU-GCCCC--GUcGCCu -3'
miRNA:   3'- -UGUCGUGGAUAAgCGGGGgcCAuCGG- -5'
9617 3' -57.2 NC_002577.1 + 116830 0.67 0.809262
Target:  5'- uCAGUACaCUGUUUauuggGCCCCCGGcguGCg -3'
miRNA:   3'- uGUCGUG-GAUAAG-----CGGGGGCCau-CGg -5'
9617 3' -57.2 NC_002577.1 + 10819 0.67 0.842699
Target:  5'- gACGGCGCgCga-UCGCuUCCCGGccGCCu -3'
miRNA:   3'- -UGUCGUG-GauaAGCG-GGGGCCauCGG- -5'
9617 3' -57.2 NC_002577.1 + 128617 0.66 0.865098
Target:  5'- -gGGCGCCguccucaUGCCCCCcuccgagGGUAGCa -3'
miRNA:   3'- ugUCGUGGauaa---GCGGGGG-------CCAUCGg -5'
9617 3' -57.2 NC_002577.1 + 11056 0.71 0.615459
Target:  5'- gGCGGCGuuUcua-GCCCCCGGcgcgGGCCg -3'
miRNA:   3'- -UGUCGUggAuaagCGGGGGCCa---UCGG- -5'
9617 3' -57.2 NC_002577.1 + 42410 0.7 0.686097
Target:  5'- uACAGCACUcAUUCGa-CCgGGUAGCg -3'
miRNA:   3'- -UGUCGUGGaUAAGCggGGgCCAUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.