Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9617 | 5' | -47.7 | NC_002577.1 | + | 67049 | 1.1 | 0.015312 |
Target: 5'- cGAAACAACCGGCGAGCAAAUAUGCGAu -3' miRNA: 3'- -CUUUGUUGGCCGCUCGUUUAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 134077 | 0.78 | 0.768172 |
Target: 5'- --cGCGGCCGGCGGGCAuguccgGCGGg -3' miRNA: 3'- cuuUGUUGGCCGCUCGUuuaua-CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 163251 | 0.78 | 0.768172 |
Target: 5'- --cGCGGCCGGCGGGCAuguccgGCGGg -3' miRNA: 3'- cuuUGUUGGCCGCUCGUuuaua-CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 142957 | 0.76 | 0.867778 |
Target: 5'- cGggGCGugCGGCGAGCAcccagcGCGGa -3' miRNA: 3'- -CuuUGUugGCCGCUCGUuuaua-CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 9085 | 0.72 | 0.964697 |
Target: 5'- gGggGCGACgGGCGAccGgGAAUgcGUGCGAu -3' miRNA: 3'- -CuuUGUUGgCCGCU--CgUUUA--UACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 124529 | 0.72 | 0.964697 |
Target: 5'- gGggGCGACgGGCGAccGgGAAUgcGUGCGAu -3' miRNA: 3'- -CuuUGUUGgCCGCU--CgUUUA--UACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 135079 | 0.71 | 0.981547 |
Target: 5'- aGAAGC-GCCGGCGAGCccgcggGCGc -3' miRNA: 3'- -CUUUGuUGGCCGCUCGuuuauaCGCu -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 162249 | 0.71 | 0.981547 |
Target: 5'- aGAAGC-GCCGGCGAGCccgcggGCGc -3' miRNA: 3'- -CUUUGuUGGCCGCUCGuuuauaCGCu -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 158760 | 0.71 | 0.985529 |
Target: 5'- aGAACAGCaGGUgGAGCuguuGUGUGCGAa -3' miRNA: 3'- cUUUGUUGgCCG-CUCGuu--UAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 138578 | 0.71 | 0.985529 |
Target: 5'- aGAACAGCaGGUgGAGCuguuGUGUGCGAa -3' miRNA: 3'- cUUUGUUGgCCG-CUCGuu--UAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 159544 | 0.7 | 0.988818 |
Target: 5'- uAGACAcGCUGGCG-GCG-AUGUGCGGu -3' miRNA: 3'- cUUUGU-UGGCCGCuCGUuUAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 141827 | 0.7 | 0.988818 |
Target: 5'- -cGACAcgcuCCuGCGAGCGAcUGUGCGGu -3' miRNA: 3'- cuUUGUu---GGcCGCUCGUUuAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 137793 | 0.7 | 0.988818 |
Target: 5'- uAGACAcGCUGGCG-GCG-AUGUGCGGu -3' miRNA: 3'- cUUUGU-UGGCCGCuCGUuUAUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 140021 | 0.7 | 0.99219 |
Target: 5'- aGGGCA-CCGGCGAGCGuccgacaacGCGAg -3' miRNA: 3'- cUUUGUuGGCCGCUCGUuuaua----CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 157316 | 0.7 | 0.99219 |
Target: 5'- aGGGCA-CCGGCGAGCGuccgacaacGCGAg -3' miRNA: 3'- cUUUGUuGGCCGCUCGUuuaua----CGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 137889 | 0.7 | 0.992628 |
Target: 5'- -uGACGGCCGcGCccGGCGAAcUGUGCGAg -3' miRNA: 3'- cuUUGUUGGC-CGc-UCGUUU-AUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 136163 | 0.7 | 0.992628 |
Target: 5'- aGAGGCGGuuGGCGAGUgcg---GCGAg -3' miRNA: 3'- -CUUUGUUggCCGCUCGuuuauaCGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 159448 | 0.7 | 0.992628 |
Target: 5'- -uGACGGCCGcGCccGGCGAAcUGUGCGAg -3' miRNA: 3'- cuUUGUUGGC-CGc-UCGUUU-AUACGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 161175 | 0.7 | 0.992628 |
Target: 5'- aGAGGCGGuuGGCGAGUgcg---GCGAg -3' miRNA: 3'- -CUUUGUUggCCGCUCGuuuauaCGCU- -5' |
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9617 | 5' | -47.7 | NC_002577.1 | + | 106141 | 0.7 | 0.992628 |
Target: 5'- cGGACuGCCGGUGAuGCGA---UGCGAg -3' miRNA: 3'- cUUUGuUGGCCGCU-CGUUuauACGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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