miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9617 5' -47.7 NC_002577.1 + 134077 0.78 0.768172
Target:  5'- --cGCGGCCGGCGGGCAuguccgGCGGg -3'
miRNA:   3'- cuuUGUUGGCCGCUCGUuuaua-CGCU- -5'
9617 5' -47.7 NC_002577.1 + 142225 0.66 0.999701
Target:  5'- -cGACGGCCGGacaGAGCGAAUuauuaaGCa- -3'
miRNA:   3'- cuUUGUUGGCCg--CUCGUUUAua----CGcu -5'
9617 5' -47.7 NC_002577.1 + 140516 0.66 0.999766
Target:  5'- gGAAcCGugCGGaGGGgGGGUAUGCGGa -3'
miRNA:   3'- -CUUuGUugGCCgCUCgUUUAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 8792 0.66 0.999817
Target:  5'- uGGACGAUCcGCGAGCGAcuuaugAUGCGc -3'
miRNA:   3'- cUUUGUUGGcCGCUCGUUua----UACGCu -5'
9617 5' -47.7 NC_002577.1 + 138578 0.71 0.985529
Target:  5'- aGAACAGCaGGUgGAGCuguuGUGUGCGAa -3'
miRNA:   3'- cUUUGUUGgCCG-CUCGuu--UAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 137793 0.7 0.988818
Target:  5'- uAGACAcGCUGGCG-GCG-AUGUGCGGu -3'
miRNA:   3'- cUUUGU-UGGCCGCuCGUuUAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 140021 0.7 0.99219
Target:  5'- aGGGCA-CCGGCGAGCGuccgacaacGCGAg -3'
miRNA:   3'- cUUUGUuGGCCGCUCGUuuaua----CGCU- -5'
9617 5' -47.7 NC_002577.1 + 136163 0.7 0.992628
Target:  5'- aGAGGCGGuuGGCGAGUgcg---GCGAg -3'
miRNA:   3'- -CUUUGUUggCCGCUCGuuuauaCGCU- -5'
9617 5' -47.7 NC_002577.1 + 135435 0.68 0.99801
Target:  5'- -cGACGACUGGCuGGGC----GUGCGGa -3'
miRNA:   3'- cuUUGUUGGCCG-CUCGuuuaUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 121957 0.67 0.999088
Target:  5'- cGAGGCcGCCGGgGAGgAGGU-UGUGGg -3'
miRNA:   3'- -CUUUGuUGGCCgCUCgUUUAuACGCU- -5'
9617 5' -47.7 NC_002577.1 + 125672 0.69 0.996019
Target:  5'- -uAAguACCGGCGuuccgggcggucGGCGAGUcgGCGGa -3'
miRNA:   3'- cuUUguUGGCCGC------------UCGUUUAuaCGCU- -5'
9617 5' -47.7 NC_002577.1 + 142957 0.76 0.867778
Target:  5'- cGggGCGugCGGCGAGCAcccagcGCGGa -3'
miRNA:   3'- -CuuUGUugGCCGCUCGUuuaua-CGCU- -5'
9617 5' -47.7 NC_002577.1 + 128552 0.67 0.999261
Target:  5'- cGAAgAACCGGcCGAGCA--UcgGCGc -3'
miRNA:   3'- cUUUgUUGGCC-GCUCGUuuAuaCGCu -5'
9617 5' -47.7 NC_002577.1 + 124529 0.72 0.964697
Target:  5'- gGggGCGACgGGCGAccGgGAAUgcGUGCGAu -3'
miRNA:   3'- -CuuUGUUGgCCGCU--CgUUUA--UACGCU- -5'
9617 5' -47.7 NC_002577.1 + 137889 0.7 0.992628
Target:  5'- -uGACGGCCGcGCccGGCGAAcUGUGCGAg -3'
miRNA:   3'- cuUUGUUGGC-CGc-UCGUUU-AUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 161394 0.66 0.999621
Target:  5'- --cGCGGCCGGCGAcaucaGUcuGUGcUGCGGa -3'
miRNA:   3'- cuuUGUUGGCCGCU-----CGuuUAU-ACGCU- -5'
9617 5' -47.7 NC_002577.1 + 157885 0.66 0.999817
Target:  5'- --uGCAGCCGGCGccgcGGCGGcuucUAUGCc- -3'
miRNA:   3'- cuuUGUUGGCCGC----UCGUUu---AUACGcu -5'
9617 5' -47.7 NC_002577.1 + 162249 0.71 0.981547
Target:  5'- aGAAGC-GCCGGCGAGCccgcggGCGc -3'
miRNA:   3'- -CUUUGuUGGCCGCUCGuuuauaCGCu -5'
9617 5' -47.7 NC_002577.1 + 141827 0.7 0.988818
Target:  5'- -cGACAcgcuCCuGCGAGCGAcUGUGCGGu -3'
miRNA:   3'- cuUUGUu---GGcCGCUCGUUuAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 42777 0.67 0.998882
Target:  5'- -uAGCGAUCGGCGAGCuggcAGUucagcAUGCa- -3'
miRNA:   3'- cuUUGUUGGCCGCUCGu---UUA-----UACGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.