miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9617 5' -47.7 NC_002577.1 + 5062 0.67 0.999261
Target:  5'- cGAAgAACCGGcCGAGCA--UcgGCGc -3'
miRNA:   3'- cUUUgUUGGCC-GCUCGUuuAuaCGCu -5'
9617 5' -47.7 NC_002577.1 + 7942 0.69 0.996019
Target:  5'- -uAAguACCGGCGuuccgggcggucGGCGAGUcgGCGGa -3'
miRNA:   3'- cuUUguUGGCCGC------------UCGUUUAuaCGCU- -5'
9617 5' -47.7 NC_002577.1 + 8792 0.66 0.999817
Target:  5'- uGGACGAUCcGCGAGCGAcuuaugAUGCGc -3'
miRNA:   3'- cUUUGUUGGcCGCUCGUUua----UACGCu -5'
9617 5' -47.7 NC_002577.1 + 9085 0.72 0.964697
Target:  5'- gGggGCGACgGGCGAccGgGAAUgcGUGCGAu -3'
miRNA:   3'- -CuuUGUUGgCCGCU--CgUUUA--UACGCU- -5'
9617 5' -47.7 NC_002577.1 + 11656 0.67 0.999088
Target:  5'- cGAGGCcGCCGGgGAGgAGGU-UGUGGg -3'
miRNA:   3'- -CUUUGuUGGCCgCUCgUUUAuACGCU- -5'
9617 5' -47.7 NC_002577.1 + 14511 0.66 0.999523
Target:  5'- gGggGC-ACCGGCGAagaucugcccGCGAAUAacaGUGAa -3'
miRNA:   3'- -CuuUGuUGGCCGCU----------CGUUUAUa--CGCU- -5'
9617 5' -47.7 NC_002577.1 + 39661 0.66 0.999701
Target:  5'- cGAGGCuaucACCaGGCGAGCGccGGUAaGCGc -3'
miRNA:   3'- -CUUUGu---UGG-CCGCUCGU--UUAUaCGCu -5'
9617 5' -47.7 NC_002577.1 + 42777 0.67 0.998882
Target:  5'- -uAGCGAUCGGCGAGCuggcAGUucagcAUGCa- -3'
miRNA:   3'- cuUUGUUGGCCGCUCGu---UUA-----UACGcu -5'
9617 5' -47.7 NC_002577.1 + 44341 0.66 0.999817
Target:  5'- -cGGCAcgucAUCGGCGA-CAAggcAUAUGCGAa -3'
miRNA:   3'- cuUUGU----UGGCCGCUcGUU---UAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 52247 0.67 0.999088
Target:  5'- aGGAGCAucuacGCCGGCGAGCG-----GCa- -3'
miRNA:   3'- -CUUUGU-----UGGCCGCUCGUuuauaCGcu -5'
9617 5' -47.7 NC_002577.1 + 63429 0.68 0.99801
Target:  5'- aGAuGCGAuCCGa-GAGUAGGUGUGCGAa -3'
miRNA:   3'- -CUuUGUU-GGCcgCUCGUUUAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 65052 0.68 0.997156
Target:  5'- -cAACGGCCGGCaaaAGCGAugcAUGUGCu- -3'
miRNA:   3'- cuUUGUUGGCCGc--UCGUU---UAUACGcu -5'
9617 5' -47.7 NC_002577.1 + 65080 0.67 0.999261
Target:  5'- ---cCGGCUGGCGGGCAuGAUAgaaGCGu -3'
miRNA:   3'- cuuuGUUGGCCGCUCGU-UUAUa--CGCu -5'
9617 5' -47.7 NC_002577.1 + 67049 1.1 0.015312
Target:  5'- cGAAACAACCGGCGAGCAAAUAUGCGAu -3'
miRNA:   3'- -CUUUGUUGGCCGCUCGUUUAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 100600 0.66 0.999808
Target:  5'- -uAACAACCGG-GGGCAuccugaacGCGAa -3'
miRNA:   3'- cuUUGUUGGCCgCUCGUuuaua---CGCU- -5'
9617 5' -47.7 NC_002577.1 + 106141 0.7 0.992628
Target:  5'- cGGACuGCCGGUGAuGCGA---UGCGAg -3'
miRNA:   3'- cUUUGuUGGCCGCU-CGUUuauACGCU- -5'
9617 5' -47.7 NC_002577.1 + 108879 0.67 0.999405
Target:  5'- gGggGCAAUagCGGuCGAGCcuGAGcgcUGUGCGAu -3'
miRNA:   3'- -CuuUGUUG--GCC-GCUCG--UUU---AUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 121957 0.67 0.999088
Target:  5'- cGAGGCcGCCGGgGAGgAGGU-UGUGGg -3'
miRNA:   3'- -CUUUGuUGGCCgCUCgUUUAuACGCU- -5'
9617 5' -47.7 NC_002577.1 + 124529 0.72 0.964697
Target:  5'- gGggGCGACgGGCGAccGgGAAUgcGUGCGAu -3'
miRNA:   3'- -CuuUGUUGgCCGCU--CgUUUA--UACGCU- -5'
9617 5' -47.7 NC_002577.1 + 124822 0.66 0.999817
Target:  5'- uGGACGAUCcGCGAGCGAcuuaugAUGCGc -3'
miRNA:   3'- cUUUGUUGGcCGCUCGUUua----UACGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.