miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9620 5' -49.4 NC_002577.1 + 70545 1.16 0.005313
Target:  5'- uGCCCAAAAUGACGAAGGCCUUUCCGCg -3'
miRNA:   3'- -CGGGUUUUACUGCUUCCGGAAAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 47151 0.75 0.820209
Target:  5'- gGCCCGu--UGACGAccauGGCCggaugCCGCu -3'
miRNA:   3'- -CGGGUuuuACUGCUu---CCGGaaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 101317 0.75 0.854278
Target:  5'- gGUCCGAugcgGGCGAAGGC---UCCGCa -3'
miRNA:   3'- -CGGGUUuua-CUGCUUCCGgaaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 125560 0.72 0.929074
Target:  5'- gGCCgGAGAggcUGGCGGgcGGGUCUcUCCGUa -3'
miRNA:   3'- -CGGgUUUU---ACUGCU--UCCGGAaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 8053 0.72 0.929074
Target:  5'- gGCCgGAGAggcUGGCGGgcGGGUCUcUCCGUa -3'
miRNA:   3'- -CGGgUUUU---ACUGCU--UCCGGAaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 156109 0.72 0.934365
Target:  5'- uCCCGGGGUGGCGGGuGGCUgcggagaaaaUCCGCc -3'
miRNA:   3'- cGGGUUUUACUGCUU-CCGGaa--------AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 141229 0.72 0.934365
Target:  5'- uCCCGGGGUGGCGGGuGGCUgcggagaaaaUCCGCc -3'
miRNA:   3'- cGGGUUUUACUGCUU-CCGGaa--------AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 157114 0.71 0.957005
Target:  5'- cGCCCcuGGU-ACGggGGCCc--CCGCc -3'
miRNA:   3'- -CGGGuuUUAcUGCuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 140224 0.71 0.957005
Target:  5'- cGCCCcuGGU-ACGggGGCCc--CCGCc -3'
miRNA:   3'- -CGGGuuUUAcUGCuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 142137 0.7 0.973348
Target:  5'- cGCCCGAgccuaagcgucucGAUGcuCaAGGGCCggUCCGCu -3'
miRNA:   3'- -CGGGUU-------------UUACu-GcUUCCGGaaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 155201 0.7 0.973348
Target:  5'- cGCCCGAgccuaagcgucucGAUGcuCaAGGGCCggUCCGCu -3'
miRNA:   3'- -CGGGUU-------------UUACu-GcUUCCGGaaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 27016 0.7 0.976291
Target:  5'- gGCCUuucuGAUGGCcgaGggGGCCg--CCGUa -3'
miRNA:   3'- -CGGGuu--UUACUG---CuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 17582 0.7 0.981019
Target:  5'- cGCCCAguggcgcgaAAcgGGCGGAGGuCCgaUCgGCc -3'
miRNA:   3'- -CGGGU---------UUuaCUGCUUCC-GGaaAGgCG- -5'
9620 5' -49.4 NC_002577.1 + 160368 0.7 0.981019
Target:  5'- gGCCCucg--GACGuuccggaaGAGGCCgcgucggcgUCCGCg -3'
miRNA:   3'- -CGGGuuuuaCUGC--------UUCCGGaa-------AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 136969 0.7 0.981019
Target:  5'- gGCCCucg--GACGuuccggaaGAGGCCgcgucggcgUCCGCg -3'
miRNA:   3'- -CGGGuuuuaCUGC--------UUCCGGaa-------AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 62822 0.7 0.981874
Target:  5'- cGCCCAGAGUuuCGAuuagauaucgauccaGGGCCaacauaaaguUUUCUGCg -3'
miRNA:   3'- -CGGGUUUUAcuGCU---------------UCCGG----------AAAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 153178 0.69 0.983101
Target:  5'- uGCCCGAGAgaACGAgaucAGGCUacaCCGCu -3'
miRNA:   3'- -CGGGUUUUacUGCU----UCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 64292 0.69 0.985719
Target:  5'- aGCCCGGGcgGuuuuaucugaggaguGCGGAGcGCCUcaugCCGCc -3'
miRNA:   3'- -CGGGUUUuaC---------------UGCUUC-CGGAaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 103021 0.69 0.988318
Target:  5'- uCCCAAAA----GucGGCCUUUCCGUa -3'
miRNA:   3'- cGGGUUUUacugCuuCCGGAAAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 137152 0.69 0.989746
Target:  5'- uUCCGGAAcGucCGAGGGCCggucgcgcUCCGCg -3'
miRNA:   3'- cGGGUUUUaCu-GCUUCCGGaa------AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.