miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9620 5' -49.4 NC_002577.1 + 1349 0.67 0.997366
Target:  5'- uCCCGGcggcGACGcaAAGGCUgcggUCCGCg -3'
miRNA:   3'- cGGGUUuua-CUGC--UUCCGGaa--AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 8053 0.72 0.929074
Target:  5'- gGCCgGAGAggcUGGCGGgcGGGUCUcUCCGUa -3'
miRNA:   3'- -CGGgUUUU---ACUGCU--UCCGGAaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 17582 0.7 0.981019
Target:  5'- cGCCCAguggcgcgaAAcgGGCGGAGGuCCgaUCgGCc -3'
miRNA:   3'- -CGGGU---------UUuaCUGCUUCC-GGaaAGgCG- -5'
9620 5' -49.4 NC_002577.1 + 21485 0.69 0.989746
Target:  5'- aUCCAAAcUGACGAAGGUauaagCCGg -3'
miRNA:   3'- cGGGUUUuACUGCUUCCGgaaa-GGCg -5'
9620 5' -49.4 NC_002577.1 + 27016 0.7 0.976291
Target:  5'- gGCCUuucuGAUGGCcgaGggGGCCg--CCGUa -3'
miRNA:   3'- -CGGGuu--UUACUG---CuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 28152 0.66 0.998727
Target:  5'- gGUCCAAAAUGuCGuGGuauauGCCcaaUUCCGCg -3'
miRNA:   3'- -CGGGUUUUACuGCuUC-----CGGa--AAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 40273 0.68 0.99219
Target:  5'- uGCaCCGGAAUGGCGAgucGGGUC---CUGCg -3'
miRNA:   3'- -CG-GGUUUUACUGCU---UCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 45439 0.67 0.997787
Target:  5'- uCCCGGGA-GAUGuagagcucccGGGGCCgcauaacgUUCCGCa -3'
miRNA:   3'- cGGGUUUUaCUGC----------UUCCGGa-------AAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 47151 0.75 0.820209
Target:  5'- gGCCCGu--UGACGAccauGGCCggaugCCGCu -3'
miRNA:   3'- -CGGGUuuuACUGCUu---CCGGaaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 60423 0.68 0.99219
Target:  5'- cCCCGuuuuAUGGCGucgccccgcccGAGGCCg--CCGCc -3'
miRNA:   3'- cGGGUuu--UACUGC-----------UUCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 62822 0.7 0.981874
Target:  5'- cGCCCAGAGUuuCGAuuagauaucgauccaGGGCCaacauaaaguUUUCUGCg -3'
miRNA:   3'- -CGGGUUUUAcuGCU---------------UCCGG----------AAAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 64292 0.69 0.985719
Target:  5'- aGCCCGGGcgGuuuuaucugaggaguGCGGAGcGCCUcaugCCGCc -3'
miRNA:   3'- -CGGGUUUuaC---------------UGCUUC-CGGAaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 66103 0.67 0.997366
Target:  5'- aCCUAAuuuUGGCGuguGGGUUUUgUCCGCa -3'
miRNA:   3'- cGGGUUuu-ACUGCu--UCCGGAA-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 66522 0.68 0.993225
Target:  5'- cGUCUAcauUGcgaacGCGAAGGCCUacggCCGCg -3'
miRNA:   3'- -CGGGUuuuAC-----UGCUUCCGGAaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 70545 1.16 0.005313
Target:  5'- uGCCCAAAAUGACGAAGGCCUUUCCGCg -3'
miRNA:   3'- -CGGGUUUUACUGCUUCCGGAAAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 74545 0.66 0.998953
Target:  5'- uGCCCAuAGUuaaaucuccgccGACGAuGaGCCUgaUCCGUg -3'
miRNA:   3'- -CGGGUuUUA------------CUGCUuC-CGGAa-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 74699 0.68 0.99219
Target:  5'- -aUCAGugGGUGugGAuugcAGGCCUUUCCa- -3'
miRNA:   3'- cgGGUU--UUACugCU----UCCGGAAAGGcg -5'
9620 5' -49.4 NC_002577.1 + 82310 0.67 0.996933
Target:  5'- uGCCCuaguagcggcgcguAGUGGCGcgcAGGCCccgCCGCc -3'
miRNA:   3'- -CGGGuu------------UUACUGCu--UCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 87872 0.68 0.994965
Target:  5'- cGCCaCAAGAUGAaucCGAcaaaauuuuGGGCCagcauugCCGCu -3'
miRNA:   3'- -CGG-GUUUUACU---GCU---------UCCGGaaa----GGCG- -5'
9620 5' -49.4 NC_002577.1 + 91968 0.67 0.997366
Target:  5'- uGCCCAGuucguagcguuGAUGcCGAcaGCCgcaUCCGCa -3'
miRNA:   3'- -CGGGUU-----------UUACuGCUucCGGaa-AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.