miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9620 5' -49.4 NC_002577.1 + 101317 0.75 0.854278
Target:  5'- gGUCCGAugcgGGCGAAGGC---UCCGCa -3'
miRNA:   3'- -CGGGUUuua-CUGCUUCCGgaaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 156919 0.68 0.993225
Target:  5'- uUCCGAg--GGCGggGGCCc--CCGUa -3'
miRNA:   3'- cGGGUUuuaCUGCuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 87872 0.68 0.994965
Target:  5'- cGCCaCAAGAUGAaucCGAcaaaauuuuGGGCCagcauugCCGCu -3'
miRNA:   3'- -CGG-GUUUUACU---GCU---------UCCGGaaa----GGCG- -5'
9620 5' -49.4 NC_002577.1 + 28152 0.66 0.998727
Target:  5'- gGUCCAAAAUGuCGuGGuauauGCCcaaUUCCGCg -3'
miRNA:   3'- -CGGGUUUUACuGCuUC-----CGGa--AAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 155201 0.7 0.973348
Target:  5'- cGCCCGAgccuaagcgucucGAUGcuCaAGGGCCggUCCGCu -3'
miRNA:   3'- -CGGGUU-------------UUACu-GcUUCCGGaaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 27016 0.7 0.976291
Target:  5'- gGCCUuucuGAUGGCcgaGggGGCCg--CCGUa -3'
miRNA:   3'- -CGGGuu--UUACUG---CuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 62822 0.7 0.981874
Target:  5'- cGCCCAGAGUuuCGAuuagauaucgauccaGGGCCaacauaaaguUUUCUGCg -3'
miRNA:   3'- -CGGGUUUUAcuGCU---------------UCCGG----------AAAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 153178 0.69 0.983101
Target:  5'- uGCCCGAGAgaACGAgaucAGGCUacaCCGCu -3'
miRNA:   3'- -CGGGUUUUacUGCU----UCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 104690 0.69 0.989746
Target:  5'- cGCCUgc-GUGACGAuccgcGGCgUcgUCCGCg -3'
miRNA:   3'- -CGGGuuuUACUGCUu----CCGgAa-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 66522 0.68 0.993225
Target:  5'- cGUCUAcauUGcgaacGCGAAGGCCUacggCCGCg -3'
miRNA:   3'- -CGGGUuuuAC-----UGCUUCCGGAaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 121557 0.68 0.99219
Target:  5'- gGCCCGGAGgaGGCGGcGGGCauCUUguaCCGCg -3'
miRNA:   3'- -CGGGUUUUa-CUGCU-UCCG--GAAa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 21485 0.69 0.989746
Target:  5'- aUCCAAAcUGACGAAGGUauaagCCGg -3'
miRNA:   3'- cGGGUUUuACUGCUUCCGgaaa-GGCg -5'
9620 5' -49.4 NC_002577.1 + 8053 0.72 0.929074
Target:  5'- gGCCgGAGAggcUGGCGGgcGGGUCUcUCCGUa -3'
miRNA:   3'- -CGGgUUUU---ACUGCU--UCCGGAaAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 40273 0.68 0.99219
Target:  5'- uGCaCCGGAAUGGCGAgucGGGUC---CUGCg -3'
miRNA:   3'- -CG-GGUUUUACUGCU---UCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 141229 0.72 0.934365
Target:  5'- uCCCGGGGUGGCGGGuGGCUgcggagaaaaUCCGCc -3'
miRNA:   3'- cGGGUUUUACUGCUU-CCGGaa--------AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 160186 0.69 0.989746
Target:  5'- uUCCGGAAcGucCGAGGGCCggucgcgcUCCGCg -3'
miRNA:   3'- cGGGUUUUaCu-GCUUCCGGaa------AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 74699 0.68 0.99219
Target:  5'- -aUCAGugGGUGugGAuugcAGGCCUUUCCa- -3'
miRNA:   3'- cgGGUU--UUACugCU----UCCGGAAAGGcg -5'
9620 5' -49.4 NC_002577.1 + 159521 0.68 0.994147
Target:  5'- uGCCCAAAGUacGGCGGccGGGCUcaUCC-Cg -3'
miRNA:   3'- -CGGGUUUUA--CUGCU--UCCGGaaAGGcG- -5'
9620 5' -49.4 NC_002577.1 + 140224 0.71 0.957005
Target:  5'- cGCCCcuGGU-ACGggGGCCc--CCGCc -3'
miRNA:   3'- -CGGGuuUUAcUGCuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 136969 0.7 0.981019
Target:  5'- gGCCCucg--GACGuuccggaaGAGGCCgcgucggcgUCCGCg -3'
miRNA:   3'- -CGGGuuuuaCUGC--------UUCCGGaa-------AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.