miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 3' -50.2 NC_002577.1 + 81112 1.13 0.006373
Target:  5'- gCGCCAGAACUGAAAUAGCUCACGCGCu -3'
miRNA:   3'- -GCGGUCUUGACUUUAUCGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 98234 0.76 0.712003
Target:  5'- aCGCCA--GCUGAAAUAuuuuccccaugcacGCgUCACGCGCg -3'
miRNA:   3'- -GCGGUcuUGACUUUAU--------------CG-AGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 22336 0.75 0.784901
Target:  5'- gGCCAGGGCgguuUGAAAUGaUUCGCGCGUu -3'
miRNA:   3'- gCGGUCUUG----ACUUUAUcGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 1512 0.73 0.878841
Target:  5'- aCGgCGGAugUGcgcgcAUGcGCUCGCGCGCg -3'
miRNA:   3'- -GCgGUCUugACuu---UAU-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 132102 0.73 0.878841
Target:  5'- aCGgCGGAugUGcgcgcAUGcGCUCGCGCGCg -3'
miRNA:   3'- -GCgGUCUugACuu---UAU-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 24185 0.72 0.918698
Target:  5'- aGCCAG-GCUGAGAUGuaUCcACGgGCg -3'
miRNA:   3'- gCGGUCuUGACUUUAUcgAG-UGCgCG- -5'
9624 3' -50.2 NC_002577.1 + 4642 0.71 0.935203
Target:  5'- gGCCGGGccgcGCUGcagGGAUGGCcgcgggUACGCGCg -3'
miRNA:   3'- gCGGUCU----UGAC---UUUAUCGa-----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 128971 0.71 0.935203
Target:  5'- gGCCGGGccgcGCUGcagGGAUGGCcgcgggUACGCGCg -3'
miRNA:   3'- gCGGUCU----UGAC---UUUAUCGa-----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 160710 0.71 0.940191
Target:  5'- gGCCAuGGCgGAGAUcGCUCGCGUGg -3'
miRNA:   3'- gCGGUcUUGaCUUUAuCGAGUGCGCg -5'
9624 3' -50.2 NC_002577.1 + 136627 0.71 0.940191
Target:  5'- gGCCAuGGCgGAGAUcGCUCGCGUGg -3'
miRNA:   3'- gCGGUcUUGaCUUUAuCGAGUGCGCg -5'
9624 3' -50.2 NC_002577.1 + 159705 0.71 0.944925
Target:  5'- gGCCGcugaacGAGCUGGuggacGCUUGCGCGCu -3'
miRNA:   3'- gCGGU------CUUGACUuuau-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 44450 0.71 0.944925
Target:  5'- aCGCCAGAAUauuggUGGAu--GCggACGCGCu -3'
miRNA:   3'- -GCGGUCUUG-----ACUUuauCGagUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 137632 0.71 0.944925
Target:  5'- gGCCGcugaacGAGCUGGuggacGCUUGCGCGCu -3'
miRNA:   3'- gCGGU------CUUGACUuuau-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 162810 0.7 0.949406
Target:  5'- aGCUGGGAUUGAGauGUAGCgCugGCGa -3'
miRNA:   3'- gCGGUCUUGACUU--UAUCGaGugCGCg -5'
9624 3' -50.2 NC_002577.1 + 38163 0.7 0.949406
Target:  5'- gCGCCAGAggccaAUUGAAcucGGCgccggCAUGCGCu -3'
miRNA:   3'- -GCGGUCU-----UGACUUua-UCGa----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 134517 0.7 0.949406
Target:  5'- aGCUGGGAUUGAGauGUAGCgCugGCGa -3'
miRNA:   3'- gCGGUCUUGACUU--UAUCGaGugCGCg -5'
9624 3' -50.2 NC_002577.1 + 148580 0.7 0.952811
Target:  5'- gGCCGGAACUaugGAAAcaaauuccccagAGCUCcuCGCGCu -3'
miRNA:   3'- gCGGUCUUGA---CUUUa-----------UCGAGu-GCGCG- -5'
9624 3' -50.2 NC_002577.1 + 104788 0.69 0.970321
Target:  5'- gCGCCgucugacuuaaaacAGAACUGGAuaaguaaaGGCUCGgGUGCa -3'
miRNA:   3'- -GCGG--------------UCUUGACUUua------UCGAGUgCGCG- -5'
9624 3' -50.2 NC_002577.1 + 115454 0.69 0.974055
Target:  5'- uGCCGGGuGCUGAAugaGGgUCACGCa- -3'
miRNA:   3'- gCGGUCU-UGACUUua-UCgAGUGCGcg -5'
9624 3' -50.2 NC_002577.1 + 13496 0.69 0.976431
Target:  5'- gGUCAgGAACUGGGAUAuauuuacGCUC-CGUGCc -3'
miRNA:   3'- gCGGU-CUUGACUUUAU-------CGAGuGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.