miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 3' -50.2 NC_002577.1 + 98234 0.76 0.712003
Target:  5'- aCGCCA--GCUGAAAUAuuuuccccaugcacGCgUCACGCGCg -3'
miRNA:   3'- -GCGGUcuUGACUUUAU--------------CG-AGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 128314 0.67 0.991214
Target:  5'- -aCCGGGACgGAcagGGCgaCGCGCGCg -3'
miRNA:   3'- gcGGUCUUGaCUuuaUCGa-GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 132222 0.67 0.993368
Target:  5'- gGUCGGGGCUaGGAgcGCcCGCGUGCg -3'
miRNA:   3'- gCGGUCUUGAcUUUauCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 135624 0.66 0.996955
Target:  5'- aGUCGGGGCcGGGcgGcCUCugGCGCc -3'
miRNA:   3'- gCGGUCUUGaCUUuaUcGAGugCGCG- -5'
9624 3' -50.2 NC_002577.1 + 159705 0.71 0.944925
Target:  5'- gGCCGcugaacGAGCUGGuggacGCUUGCGCGCu -3'
miRNA:   3'- gCGGU------CUUGACUuuau-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 162810 0.7 0.949406
Target:  5'- aGCUGGGAUUGAGauGUAGCgCugGCGa -3'
miRNA:   3'- gCGGUCUUGACUU--UAUCGaGugCGCg -5'
9624 3' -50.2 NC_002577.1 + 148580 0.7 0.952811
Target:  5'- gGCCGGAACUaugGAAAcaaauuccccagAGCUCcuCGCGCu -3'
miRNA:   3'- gCGGUCUUGA---CUUUa-----------UCGAGu-GCGCG- -5'
9624 3' -50.2 NC_002577.1 + 129972 0.69 0.976685
Target:  5'- uGCCGGcgGACUgcaggcgaaGAAGUAGC-CGgGCGCg -3'
miRNA:   3'- gCGGUC--UUGA---------CUUUAUCGaGUgCGCG- -5'
9624 3' -50.2 NC_002577.1 + 80922 0.68 0.983403
Target:  5'- gCGCguGAGCUauuucAGUUCugGCGCu -3'
miRNA:   3'- -GCGguCUUGAcuuuaUCGAGugCGCG- -5'
9624 3' -50.2 NC_002577.1 + 7758 0.67 0.991214
Target:  5'- cCGcCCGGAACgccGGUA-CUUACGCGCu -3'
miRNA:   3'- -GC-GGUCUUGacuUUAUcGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 121599 0.68 0.986989
Target:  5'- gCGCCGGAGCa-----GGCgCGCGUGCg -3'
miRNA:   3'- -GCGGUCUUGacuuuaUCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 38575 0.68 0.983403
Target:  5'- gGCCAGAAacGAGAU-GCUCGCggaccuaagaGCGCc -3'
miRNA:   3'- gCGGUCUUgaCUUUAuCGAGUG----------CGCG- -5'
9624 3' -50.2 NC_002577.1 + 132102 0.73 0.878841
Target:  5'- aCGgCGGAugUGcgcgcAUGcGCUCGCGCGCg -3'
miRNA:   3'- -GCgGUCUugACuu---UAU-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 123017 0.68 0.988542
Target:  5'- gGCguGAGCUcGGGAUgAGuCUCggACGCGCg -3'
miRNA:   3'- gCGguCUUGA-CUUUA-UC-GAG--UGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 128971 0.71 0.935203
Target:  5'- gGCCGGGccgcGCUGcagGGAUGGCcgcgggUACGCGCg -3'
miRNA:   3'- gCGGUCU----UGAC---UUUAUCGa-----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 128922 0.68 0.981351
Target:  5'- aCGCCGauGGACgGAGAUGGC--GCGCGg -3'
miRNA:   3'- -GCGGU--CUUGaCUUUAUCGagUGCGCg -5'
9624 3' -50.2 NC_002577.1 + 102031 0.67 0.989947
Target:  5'- gGCCcgAGGGCcGAAGacguUAGggCACGCGCg -3'
miRNA:   3'- gCGG--UCUUGaCUUU----AUCgaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 111633 0.67 0.991684
Target:  5'- uGCCcuAGAAUcGAcauuacacaaauacgGAUGGC-CGCGCGCa -3'
miRNA:   3'- gCGG--UCUUGaCU---------------UUAUCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 160710 0.71 0.940191
Target:  5'- gGCCAuGGCgGAGAUcGCUCGCGUGg -3'
miRNA:   3'- gCGGUcUUGaCUUUAuCGAGUGCGCg -5'
9624 3' -50.2 NC_002577.1 + 38163 0.7 0.949406
Target:  5'- gCGCCAGAggccaAUUGAAcucGGCgccggCAUGCGCu -3'
miRNA:   3'- -GCGGUCU-----UGACUUua-UCGa----GUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.