miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 3' -50.2 NC_002577.1 + 1392 0.67 0.993368
Target:  5'- gGUCGGGGCUaGGAgcGCcCGCGUGCg -3'
miRNA:   3'- gCGGUCUUGAcUUUauCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 1512 0.73 0.878841
Target:  5'- aCGgCGGAugUGcgcgcAUGcGCUCGCGCGCg -3'
miRNA:   3'- -GCgGUCUugACuu---UAU-CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 3641 0.69 0.976685
Target:  5'- uGCCGGcgGACUgcaggcgaaGAAGUAGC-CGgGCGCg -3'
miRNA:   3'- gCGGUC--UUGA---------CUUUAUCGaGUgCGCG- -5'
9624 3' -50.2 NC_002577.1 + 4642 0.71 0.935203
Target:  5'- gGCCGGGccgcGCUGcagGGAUGGCcgcgggUACGCGCg -3'
miRNA:   3'- gCGGUCU----UGAC---UUUAUCGa-----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 4691 0.68 0.981351
Target:  5'- aCGCCGauGGACgGAGAUGGC--GCGCGg -3'
miRNA:   3'- -GCGGU--CUUGaCUUUAUCGagUGCGCg -5'
9624 3' -50.2 NC_002577.1 + 4715 0.66 0.996409
Target:  5'- aG-CAGAGCUcGGuucgcuucGCUCGCGCGCc -3'
miRNA:   3'- gCgGUCUUGA-CUuuau----CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 5300 0.67 0.991214
Target:  5'- -aCCGGGACgGAcagGGCgaCGCGCGCg -3'
miRNA:   3'- gcGGUCUUGaCUuuaUCGa-GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 7758 0.67 0.991214
Target:  5'- cCGcCCGGAACgccGGUA-CUUACGCGCu -3'
miRNA:   3'- -GC-GGUCUUGacuUUAUcGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 12099 0.68 0.986989
Target:  5'- gCGCCGGAGCa-----GGCgCGCGUGCg -3'
miRNA:   3'- -GCGGUCUUGacuuuaUCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 13496 0.69 0.976431
Target:  5'- gGUCAgGAACUGGGAUAuauuuacGCUC-CGUGCc -3'
miRNA:   3'- gCGGU-CUUGACUUUAU-------CGAGuGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 22336 0.75 0.784901
Target:  5'- gGCCAGGGCgguuUGAAAUGaUUCGCGCGUu -3'
miRNA:   3'- gCGGUCUUG----ACUUUAUcGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 24185 0.72 0.918698
Target:  5'- aGCCAG-GCUGAGAUGuaUCcACGgGCg -3'
miRNA:   3'- gCGGUCuUGACUUUAUcgAG-UGCgCG- -5'
9624 3' -50.2 NC_002577.1 + 24437 0.67 0.993368
Target:  5'- gCGCCcGuuCUGAGAUcagGGCUUcCGUGCg -3'
miRNA:   3'- -GCGGuCuuGACUUUA---UCGAGuGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 24710 0.66 0.995786
Target:  5'- gGCC-GAugUGAAAagAGCUguCGCGa -3'
miRNA:   3'- gCGGuCUugACUUUa-UCGAguGCGCg -5'
9624 3' -50.2 NC_002577.1 + 33351 0.69 0.976685
Target:  5'- aCGCCAGAACcGGGAU-GCUCGgaGCa- -3'
miRNA:   3'- -GCGGUCUUGaCUUUAuCGAGUg-CGcg -5'
9624 3' -50.2 NC_002577.1 + 38163 0.7 0.949406
Target:  5'- gCGCCAGAggccaAUUGAAcucGGCgccggCAUGCGCu -3'
miRNA:   3'- -GCGGUCU-----UGACUUua-UCGa----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 38358 0.69 0.976685
Target:  5'- uGCCGGcGCcGAGuucaauUGGcCUCugGCGCg -3'
miRNA:   3'- gCGGUCuUGaCUUu-----AUC-GAGugCGCG- -5'
9624 3' -50.2 NC_002577.1 + 38575 0.68 0.983403
Target:  5'- gGCCAGAAacGAGAU-GCUCGCggaccuaagaGCGCc -3'
miRNA:   3'- gCGGUCUUgaCUUUAuCGAGUG----------CGCG- -5'
9624 3' -50.2 NC_002577.1 + 43941 0.68 0.986825
Target:  5'- gCGCCcaaaaacuguGGAACgGGAggAGCUCugccgagcagcguACGCGCg -3'
miRNA:   3'- -GCGG----------UCUUGaCUUuaUCGAG-------------UGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 44450 0.71 0.944925
Target:  5'- aCGCCAGAAUauuggUGGAu--GCggACGCGCu -3'
miRNA:   3'- -GCGGUCUUG-----ACUUuauCGagUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.