miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 5' -53.9 NC_002577.1 + 81073 1.1 0.003617
Target:  5'- gAGACGCCAAUACAGCCAUCGCAGCUCu -3'
miRNA:   3'- -UCUGCGGUUAUGUCGGUAGCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 20017 0.7 0.80204
Target:  5'- cGGCGCCgAAUACcauGCCG-CGCcGCUCu -3'
miRNA:   3'- uCUGCGG-UUAUGu--CGGUaGCGuCGAG- -5'
9624 5' -53.9 NC_002577.1 + 152981 0.69 0.837225
Target:  5'- uGGugGCC---GCGGCCGUCGUaacuacgguaAGCUUu -3'
miRNA:   3'- -UCugCGGuuaUGUCGGUAGCG----------UCGAG- -5'
9624 5' -53.9 NC_002577.1 + 77174 0.69 0.837225
Target:  5'- cGACGCCGuuccaauagauaGUACAuccucgacaucGCCGUCuCGGCUCu -3'
miRNA:   3'- uCUGCGGU------------UAUGU-----------CGGUAGcGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 133928 0.69 0.837225
Target:  5'- uGGugGCCAGgguCcGCCGcgCGCAuGCUCg -3'
miRNA:   3'- -UCugCGGUUau-GuCGGUa-GCGU-CGAG- -5'
9624 5' -53.9 NC_002577.1 + 163399 0.69 0.837225
Target:  5'- uGGugGCCAGgguCcGCCGcgCGCAuGCUCg -3'
miRNA:   3'- -UCugCGGUUau-GuCGGUa-GCGU-CGAG- -5'
9624 5' -53.9 NC_002577.1 + 32758 0.69 0.845552
Target:  5'- aGGuuCGCCAA-ACAGCCAUacgcgagaacUGCAGUUCu -3'
miRNA:   3'- -UCu-GCGGUUaUGUCGGUA----------GCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 142586 0.69 0.85766
Target:  5'- uGGACGCCGGUGCguuaggggcaaguagGGCCGgcccccccucccccaCGCAGCg- -3'
miRNA:   3'- -UCUGCGGUUAUG---------------UCGGUa--------------GCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 154750 0.69 0.85766
Target:  5'- uGGACGCCGGUGCguuaggggcaaguagGGCCGgcccccccucccccaCGCAGCg- -3'
miRNA:   3'- -UCUGCGGUUAUG---------------UCGGUa--------------GCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 81230 0.69 0.861589
Target:  5'- -aGCGCCGuaACAGCCGcCGUAGUUUu -3'
miRNA:   3'- ucUGCGGUuaUGUCGGUaGCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 23369 0.69 0.869284
Target:  5'- -aGCGCUcuAUGCAGgCGUCGCGGC-Cg -3'
miRNA:   3'- ucUGCGGu-UAUGUCgGUAGCGUCGaG- -5'
9624 5' -53.9 NC_002577.1 + 124274 0.68 0.874538
Target:  5'- gGGGCGCgGAcgcggucugagggcUugAGCCGguggcUGCAGCUCg -3'
miRNA:   3'- -UCUGCGgUU--------------AugUCGGUa----GCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 9340 0.68 0.874538
Target:  5'- gGGGCGCgGAcgcggucugagggcUugAGCCGguggcUGCAGCUCg -3'
miRNA:   3'- -UCUGCGgUU--------------AugUCGGUa----GCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 55019 0.68 0.876756
Target:  5'- cGGCGUCGGcaaguuCAGCCGcagaaGCAGCUCg -3'
miRNA:   3'- uCUGCGGUUau----GUCGGUag---CGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 161094 0.68 0.876756
Target:  5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3'
miRNA:   3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5'
9624 5' -53.9 NC_002577.1 + 136244 0.68 0.876756
Target:  5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3'
miRNA:   3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5'
9624 5' -53.9 NC_002577.1 + 54849 0.68 0.876756
Target:  5'- cGACGCC---GCAGCCGaUGaGGCUCa -3'
miRNA:   3'- uCUGCGGuuaUGUCGGUaGCgUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 76971 0.68 0.876756
Target:  5'- gAGGCGCCAu--CGGaagCAUCGguGCUa -3'
miRNA:   3'- -UCUGCGGUuauGUCg--GUAGCguCGAg -5'
9624 5' -53.9 NC_002577.1 + 103903 0.68 0.883998
Target:  5'- uGGCuGCUAGUAUcGCCG-CGCAGUUCc -3'
miRNA:   3'- uCUG-CGGUUAUGuCGGUaGCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 152907 0.68 0.88471
Target:  5'- aAGAC-CCGGaGCGGCCAUCGagaaagaaucagguaGGCUCc -3'
miRNA:   3'- -UCUGcGGUUaUGUCGGUAGCg--------------UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.