Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9624 | 5' | -53.9 | NC_002577.1 | + | 133928 | 0.69 | 0.837225 |
Target: 5'- uGGugGCCAGgguCcGCCGcgCGCAuGCUCg -3' miRNA: 3'- -UCugCGGUUau-GuCGGUa-GCGU-CGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 2639 | 0.67 | 0.933206 |
Target: 5'- uGAUGCCGGaacCAGcCCAUCGCAGa-- -3' miRNA: 3'- uCUGCGGUUau-GUC-GGUAGCGUCgag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 91576 | 0.66 | 0.938235 |
Target: 5'- uAGACGCgCcGUGCGGCUGgcuaCGguGUUCg -3' miRNA: 3'- -UCUGCG-GuUAUGUCGGUa---GCguCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 50170 | 0.66 | 0.959689 |
Target: 5'- cGugGCCGcuUGCGGaaUAUCGCAGCa- -3' miRNA: 3'- uCugCGGUu-AUGUCg-GUAGCGUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 154750 | 0.69 | 0.85766 |
Target: 5'- uGGACGCCGGUGCguuaggggcaaguagGGCCGgcccccccucccccaCGCAGCg- -3' miRNA: 3'- -UCUGCGGUUAUG---------------UCGGUa--------------GCGUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 81230 | 0.69 | 0.861589 |
Target: 5'- -aGCGCCGuaACAGCCGcCGUAGUUUu -3' miRNA: 3'- ucUGCGGUuaUGUCGGUaGCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 9340 | 0.68 | 0.874538 |
Target: 5'- gGGGCGCgGAcgcggucugagggcUugAGCCGguggcUGCAGCUCg -3' miRNA: 3'- -UCUGCGgUU--------------AugUCGGUa----GCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 54849 | 0.68 | 0.876756 |
Target: 5'- cGACGCC---GCAGCCGaUGaGGCUCa -3' miRNA: 3'- uCUGCGGuuaUGUCGGUaGCgUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 152907 | 0.68 | 0.88471 |
Target: 5'- aAGAC-CCGGaGCGGCCAUCGagaaagaaucagguaGGCUCc -3' miRNA: 3'- -UCUGcGGUUaUGUCGGUAGCg--------------UCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 134096 | 0.67 | 0.927926 |
Target: 5'- cGGCGggGAUGCAGCg--UGCGGCUCg -3' miRNA: 3'- uCUGCggUUAUGUCGguaGCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 137016 | 0.67 | 0.922395 |
Target: 5'- -cGCGCCAcgcguUGCAGCCGUCG-GGCc- -3' miRNA: 3'- ucUGCGGUu----AUGUCGGUAGCgUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 136244 | 0.68 | 0.876756 |
Target: 5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3' miRNA: 3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 152981 | 0.69 | 0.837225 |
Target: 5'- uGGugGCC---GCGGCCGUCGUaacuacgguaAGCUUu -3' miRNA: 3'- -UCugCGGuuaUGUCGGUAGCG----------UCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 155794 | 0.67 | 0.922395 |
Target: 5'- cGGAuCGCCAGUGCuGCCGgcgUCGCcacGGUUg -3' miRNA: 3'- -UCU-GCGGUUAUGuCGGU---AGCG---UCGAg -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 77174 | 0.69 | 0.837225 |
Target: 5'- cGACGCCGuuccaauagauaGUACAuccucgacaucGCCGUCuCGGCUCu -3' miRNA: 3'- uCUGCGGU------------UAUGU-----------CGGUAGcGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 76971 | 0.68 | 0.876756 |
Target: 5'- gAGGCGCCAu--CGGaagCAUCGguGCUa -3' miRNA: 3'- -UCUGCGGUuauGUCg--GUAGCguCGAg -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 4438 | 0.67 | 0.922395 |
Target: 5'- cGGCGCgCGuacccGCGGCCAUCccuGCAGCg- -3' miRNA: 3'- uCUGCG-GUua---UGUCGGUAG---CGUCGag -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 33450 | 0.67 | 0.935248 |
Target: 5'- cGAUGCgGucaACAGCCAUUGUcuaaguacgugccauAGCUCg -3' miRNA: 3'- uCUGCGgUua-UGUCGGUAGCG---------------UCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 32758 | 0.69 | 0.845552 |
Target: 5'- aGGuuCGCCAA-ACAGCCAUacgcgagaacUGCAGUUCu -3' miRNA: 3'- -UCu-GCGGUUaUGUCGGUA----------GCGUCGAG- -5' |
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9624 | 5' | -53.9 | NC_002577.1 | + | 23369 | 0.69 | 0.869284 |
Target: 5'- -aGCGCUcuAUGCAGgCGUCGCGGC-Cg -3' miRNA: 3'- ucUGCGGu-UAUGUCgGUAGCGUCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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