miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 5' -53.9 NC_002577.1 + 2639 0.67 0.933206
Target:  5'- uGAUGCCGGaacCAGcCCAUCGCAGa-- -3'
miRNA:   3'- uCUGCGGUUau-GUC-GGUAGCGUCgag -5'
9624 5' -53.9 NC_002577.1 + 4438 0.67 0.922395
Target:  5'- cGGCGCgCGuacccGCGGCCAUCccuGCAGCg- -3'
miRNA:   3'- uCUGCG-GUua---UGUCGGUAG---CGUCGag -5'
9624 5' -53.9 NC_002577.1 + 5382 0.66 0.941607
Target:  5'- aAGuCGCUAGUcgaaggauggaaucGCAGCgGUCcgaGCGGCUCu -3'
miRNA:   3'- -UCuGCGGUUA--------------UGUCGgUAG---CGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 6731 0.66 0.951834
Target:  5'- cGGCcCCGuc-CGGCCAUCGCGaCUCa -3'
miRNA:   3'- uCUGcGGUuauGUCGGUAGCGUcGAG- -5'
9624 5' -53.9 NC_002577.1 + 9340 0.68 0.874538
Target:  5'- gGGGCGCgGAcgcggucugagggcUugAGCCGguggcUGCAGCUCg -3'
miRNA:   3'- -UCUGCGgUU--------------AugUCGGUa----GCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 20017 0.7 0.80204
Target:  5'- cGGCGCCgAAUACcauGCCG-CGCcGCUCu -3'
miRNA:   3'- uCUGCGG-UUAUGu--CGGUaGCGuCGAG- -5'
9624 5' -53.9 NC_002577.1 + 21542 0.68 0.897775
Target:  5'- aAGAUGCCAcacaGGCCAaaugugaaauUCGCAGC-Ca -3'
miRNA:   3'- -UCUGCGGUuaugUCGGU----------AGCGUCGaG- -5'
9624 5' -53.9 NC_002577.1 + 23369 0.69 0.869284
Target:  5'- -aGCGCUcuAUGCAGgCGUCGCGGC-Cg -3'
miRNA:   3'- ucUGCGGu-UAUGUCgGUAGCGUCGaG- -5'
9624 5' -53.9 NC_002577.1 + 32758 0.69 0.845552
Target:  5'- aGGuuCGCCAA-ACAGCCAUacgcgagaacUGCAGUUCu -3'
miRNA:   3'- -UCu-GCGGUUaUGUCGGUA----------GCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 33450 0.67 0.935248
Target:  5'- cGAUGCgGucaACAGCCAUUGUcuaaguacgugccauAGCUCg -3'
miRNA:   3'- uCUGCGgUua-UGUCGGUAGCG---------------UCGAG- -5'
9624 5' -53.9 NC_002577.1 + 36299 0.66 0.951834
Target:  5'- cGAUGCaCAAUgcGCGGCgCAUCGCAacGCg- -3'
miRNA:   3'- uCUGCG-GUUA--UGUCG-GUAGCGU--CGag -5'
9624 5' -53.9 NC_002577.1 + 50170 0.66 0.959689
Target:  5'- cGugGCCGcuUGCGGaaUAUCGCAGCa- -3'
miRNA:   3'- uCugCGGUu-AUGUCg-GUAGCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 53086 0.66 0.943015
Target:  5'- aGGGCGCuCAAUGCGGCaUAUU-CGGCUUu -3'
miRNA:   3'- -UCUGCG-GUUAUGUCG-GUAGcGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 54682 0.68 0.897775
Target:  5'- aAGGCGCgaaaCAGUGCcGCgAUUGCAGCg- -3'
miRNA:   3'- -UCUGCG----GUUAUGuCGgUAGCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 54849 0.68 0.876756
Target:  5'- cGACGCC---GCAGCCGaUGaGGCUCa -3'
miRNA:   3'- uCUGCGGuuaUGUCGGUaGCgUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 55019 0.68 0.876756
Target:  5'- cGGCGUCGGcaaguuCAGCCGcagaaGCAGCUCg -3'
miRNA:   3'- uCUGCGGUUau----GUCGGUag---CGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 76971 0.68 0.876756
Target:  5'- gAGGCGCCAu--CGGaagCAUCGguGCUa -3'
miRNA:   3'- -UCUGCGGUuauGUCg--GUAGCguCGAg -5'
9624 5' -53.9 NC_002577.1 + 77174 0.69 0.837225
Target:  5'- cGACGCCGuuccaauagauaGUACAuccucgacaucGCCGUCuCGGCUCu -3'
miRNA:   3'- uCUGCGGU------------UAUGU-----------CGGUAGcGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 81073 1.1 0.003617
Target:  5'- gAGACGCCAAUACAGCCAUCGCAGCUCu -3'
miRNA:   3'- -UCUGCGGUUAUGUCGGUAGCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 81230 0.69 0.861589
Target:  5'- -aGCGCCGuaACAGCCGcCGUAGUUUu -3'
miRNA:   3'- ucUGCGGUuaUGUCGGUaGCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.