Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9634 | 3' | -59 | NC_002577.1 | + | 123699 | 0.69 | 0.649648 |
Target: 5'- -aUGGACggGCCGCGGCGu-CGCGgcGu -3' miRNA: 3'- uaGCCUG--CGGCGCCGCuuGCGCauCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 11054 | 0.67 | 0.746424 |
Target: 5'- -cCGGGCGaaccgCGCGGCGAACGaacccguccCGUuGGGa -3' miRNA: 3'- uaGCCUGCg----GCGCCGCUUGC---------GCA-UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 109495 | 0.68 | 0.737031 |
Target: 5'- -gCGGACGCUGCGG-GAcgACGgcauuuaccuacUGUAGGg -3' miRNA: 3'- uaGCCUGCGGCGCCgCU--UGC------------GCAUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 81268 | 0.68 | 0.737031 |
Target: 5'- --aGGugGCCGCgGGCGuGGCGCagcacgGGGa -3' miRNA: 3'- uagCCugCGGCG-CCGC-UUGCGca----UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 4790 | 0.68 | 0.727552 |
Target: 5'- --gGGACGgCGCGGCGucgucGCGCGccgcGGa -3' miRNA: 3'- uagCCUGCgGCGCCGCu----UGCGCau--CC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 121818 | 0.68 | 0.717997 |
Target: 5'- -cCGGGCGacgacCCGgGcGCGGACGCGgacgAGGc -3' miRNA: 3'- uaGCCUGC-----GGCgC-CGCUUGCGCa---UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 159763 | 0.68 | 0.708373 |
Target: 5'- -cCGcGACGCCcCGGCGcACGCGgucguGGa -3' miRNA: 3'- uaGC-CUGCGGcGCCGCuUGCGCau---CC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 9029 | 0.68 | 0.688953 |
Target: 5'- -cCGaGGC-CCGCGGUGcGCGCGaAGGg -3' miRNA: 3'- uaGC-CUGcGGCGCCGCuUGCGCaUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 158313 | 0.69 | 0.669357 |
Target: 5'- --gGGAgCGCgGUGGCGGGCGgGgGGGg -3' miRNA: 3'- uagCCU-GCGgCGCCGCUUGCgCaUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 122924 | 0.67 | 0.746424 |
Target: 5'- -cCGGACGCCGCGaGgGu-CGCGgcccgaAGGc -3' miRNA: 3'- uaGCCUGCGGCGC-CgCuuGCGCa-----UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 137172 | 0.67 | 0.755724 |
Target: 5'- -gCGGACGCCgacGCGGCcucuuccgGAACGUccgAGGg -3' miRNA: 3'- uaGCCUGCGG---CGCCG--------CUUGCGca-UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 126078 | 0.67 | 0.77401 |
Target: 5'- -gCGGAcaucaCGCCGgGGuCGAACGCGg--- -3' miRNA: 3'- uaGCCU-----GCGGCgCC-GCUUGCGCaucc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 136632 | 0.66 | 0.841015 |
Target: 5'- -cCGGAgGCCaUGGCGGAgaucgcuCGCGUGGc -3' miRNA: 3'- uaGCCUgCGGcGCCGCUU-------GCGCAUCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 137382 | 0.66 | 0.83944 |
Target: 5'- --gGGGCGCCaggagcgaacucucGCGGCuAAUGCGgcGGc -3' miRNA: 3'- uagCCUGCGG--------------CGCCGcUUGCGCauCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 10100 | 0.66 | 0.825778 |
Target: 5'- -cCGcGACGCCGCGGCccguccaugugGuAAUGCG-GGGa -3' miRNA: 3'- uaGC-CUGCGGCGCCG-----------C-UUGCGCaUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 5448 | 0.66 | 0.817518 |
Target: 5'- cGUCGGAUGCgG-GGCGAugaGCGgGUauuuAGGc -3' miRNA: 3'- -UAGCCUGCGgCgCCGCU---UGCgCA----UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 75317 | 0.66 | 0.817518 |
Target: 5'- -aCGuGACGCCGCGucGCGAgguuuuagaGCGgGUAGc -3' miRNA: 3'- uaGC-CUGCGGCGC--CGCU---------UGCgCAUCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 141737 | 0.66 | 0.817518 |
Target: 5'- -cCGGA-GCCGUGGCugugGugUGUGUAGGg -3' miRNA: 3'- uaGCCUgCGGCGCCG----CuuGCGCAUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 121878 | 0.66 | 0.799668 |
Target: 5'- -cCGGACGCCGgagagaacgacgcCGGaGGGCGCGgaccGGGc -3' miRNA: 3'- uaGCCUGCGGC-------------GCCgCUUGCGCa---UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 158085 | 0.67 | 0.780302 |
Target: 5'- aGUUGGAggcauagaagcCGCCGCGGCGccggcugcagucgaGAcCGCGgGGGg -3' miRNA: 3'- -UAGCCU-----------GCGGCGCCGC--------------UU-GCGCaUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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