miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 164047 0.72 0.130177
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 163157 0.9 0.005331
Target:  5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 162959 0.84 0.013977
Target:  5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 160415 0.73 0.1042
Target:  5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3'
miRNA:   3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5'
9640 5' -70.1 NC_002577.1 + 158439 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 158121 0.69 0.193523
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5'
9640 5' -70.1 NC_002577.1 + 157851 0.67 0.276276
Target:  5'- -aACGCCgCCCUCUgaaUCCCCCCGCgGUc -3'
miRNA:   3'- ugUGUGGgGGGGGG---GGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 157502 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 156864 0.68 0.218709
Target:  5'- uCGCACCCgCUCCCCUccggagcgaccgaguCCCagCCCGCCGUa -3'
miRNA:   3'- uGUGUGGG-GGGGGGG---------------GGG--GGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 156682 0.66 0.325268
Target:  5'- --cUACCCCCCUCCcucuacgcagacauCCUCCCCGUCu- -3'
miRNA:   3'- uguGUGGGGGGGGG--------------GGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 156634 0.76 0.056533
Target:  5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 156609 0.66 0.307385
Target:  5'- ---aGCCCCCCUCCUCCUa-CGCCAc -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGggGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 156563 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 156532 0.67 0.270364
Target:  5'- cUACACCaCCUCCCCUuagCCCCCCuCCu- -3'
miRNA:   3'- uGUGUGG-GGGGGGGG---GGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 156429 0.75 0.071102
Target:  5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 155835 0.66 0.33415
Target:  5'- cGCAUcgcuucuuGCCCCCCgCCCaacaccaccaCCaCCCCGCCc- -3'
miRNA:   3'- -UGUG--------UGGGGGGgGGG----------GG-GGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 155127 0.78 0.045553
Target:  5'- cAC-CACCaCCCCCCCCCCCCC-CCAa -3'
miRNA:   3'- -UGuGUGGgGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 155044 0.88 0.007607
Target:  5'- cCGCGCCCCCCCCCCCCCCCCcCCc- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 154814 0.66 0.320559
Target:  5'- uCACGUCUCCCUUUCCCCCCUGCa-- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 154782 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.