Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9652 | 5' | -56.1 | NC_002577.1 | + | 153663 | 0.7 | 0.739745 |
Target: 5'- uCCcGCAAGCGCUUGUgcccaCCGGgcGGGGGGa -3' miRNA: 3'- -GGcCGUUCGUGAGCA-----GGCU--UCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 108903 | 0.7 | 0.749282 |
Target: 5'- cCCGGCcauAGUuuCUCG-CCGccAGGGGGCa -3' miRNA: 3'- -GGCCGu--UCGu-GAGCaGGCu-UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 16368 | 0.7 | 0.777261 |
Target: 5'- -gGGCGcccGGC-CUUGUCCGGAGGguccAGGUu -3' miRNA: 3'- ggCCGU---UCGuGAGCAGGCUUCC----UCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 4619 | 0.69 | 0.804111 |
Target: 5'- gCC-GCGGGUACgcgCG-CCGAguauGGGGGGCg -3' miRNA: 3'- -GGcCGUUCGUGa--GCaGGCU----UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 161208 | 0.69 | 0.81277 |
Target: 5'- aCCGGCccgcccaggcGGCGCUC-UCCGGuAGGcagAGGCg -3' miRNA: 3'- -GGCCGu---------UCGUGAGcAGGCU-UCC---UCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 96628 | 0.69 | 0.81277 |
Target: 5'- cCCGGaaaAGGCGCcCGUCuucgguccucuCGGAGGGGGa -3' miRNA: 3'- -GGCCg--UUCGUGaGCAG-----------GCUUCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 136130 | 0.69 | 0.81277 |
Target: 5'- aCCGGCccgcccaggcGGCGCUC-UCCGGuAGGcagAGGCg -3' miRNA: 3'- -GGCCGu---------UCGUGAGcAGGCU-UCC---UCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 40530 | 0.69 | 0.822112 |
Target: 5'- -aGGCGAGCACgaguuucuuauacgGUCUGAAGGGaucGGCc -3' miRNA: 3'- ggCCGUUCGUGag------------CAGGCUUCCU---CCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 39640 | 0.68 | 0.829606 |
Target: 5'- gCCGGUAAGCGCaaaaCGgCCGgcGGAGa- -3' miRNA: 3'- -GGCCGUUCGUGa---GCaGGCuuCCUCcg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 2739 | 0.68 | 0.832891 |
Target: 5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3' miRNA: 3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 130874 | 0.68 | 0.832891 |
Target: 5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3' miRNA: 3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 125432 | 0.68 | 0.837767 |
Target: 5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3' miRNA: 3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 128994 | 0.68 | 0.837767 |
Target: 5'- gCC-GCGGGUACgcgCG-CCGAguaugGGGGGGCg -3' miRNA: 3'- -GGcCGUUCGUGa--GCaGGCU-----UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 8181 | 0.68 | 0.837767 |
Target: 5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3' miRNA: 3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 59819 | 0.68 | 0.845747 |
Target: 5'- gCGGCGAGaGCUCcguaaugcgCCGAAGGAaaaacuGGCg -3' miRNA: 3'- gGCCGUUCgUGAGca-------GGCUUCCU------CCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 135636 | 0.68 | 0.861139 |
Target: 5'- gCGGCcucuGGCGCcCGgccacaagggCCG-AGGAGGCu -3' miRNA: 3'- gGCCGu---UCGUGaGCa---------GGCuUCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 136569 | 0.68 | 0.861139 |
Target: 5'- gCCGGCAuagccAGCAaUCGgaguUCCaauGGGGGGCu -3' miRNA: 3'- -GGCCGU-----UCGUgAGC----AGGcu-UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 160769 | 0.68 | 0.861139 |
Target: 5'- gCCGGCAuagccAGCAaUCGgaguUCCaauGGGGGGCu -3' miRNA: 3'- -GGCCGU-----UCGUgAGC----AGGcu-UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 161702 | 0.68 | 0.861139 |
Target: 5'- gCGGCcucuGGCGCcCGgccacaagggCCG-AGGAGGCu -3' miRNA: 3'- gGCCGu---UCGUGaGCa---------GGCuUCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 156604 | 0.68 | 0.868538 |
Target: 5'- -gGGgGGGCACgc--CCGAGGGAGGg -3' miRNA: 3'- ggCCgUUCGUGagcaGGCUUCCUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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