Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 130972 | 1.12 | 0.001227 |
Target: 5'- uGCCGGAACCAGCCCAUCGCAGAGCGGg -3' miRNA: 3'- -CGGCCUUGGUCGGGUAGCGUCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 2642 | 1.12 | 0.001227 |
Target: 5'- uGCCGGAACCAGCCCAUCGCAGAGCGGg -3' miRNA: 3'- -CGGCCUUGGUCGGGUAGCGUCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 53377 | 0.73 | 0.433313 |
Target: 5'- aGCaCGGGuACU--CCCGUCGCAGAGUGGc -3' miRNA: 3'- -CG-GCCU-UGGucGGGUAGCGUCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 160548 | 0.73 | 0.433313 |
Target: 5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3' miRNA: 3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 136789 | 0.73 | 0.433313 |
Target: 5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3' miRNA: 3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 105952 | 0.73 | 0.442065 |
Target: 5'- cGCUGGGaagGCCGGCCCGUCGUguGGCcauGGg -3' miRNA: 3'- -CGGCCU---UGGUCGGGUAGCGucUCG---CC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 43388 | 0.73 | 0.468903 |
Target: 5'- gGCCauguuCCAGCCCGUCGgGGAGCa- -3' miRNA: 3'- -CGGccuu-GGUCGGGUAGCgUCUCGcc -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 101240 | 0.72 | 0.534502 |
Target: 5'- uGCCGGAaucGCCAauCCCGUCGUAGaAGCa- -3' miRNA: 3'- -CGGCCU---UGGUc-GGGUAGCGUC-UCGcc -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 11120 | 0.7 | 0.603052 |
Target: 5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3' miRNA: 3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 11700 | 0.7 | 0.603052 |
Target: 5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3' miRNA: 3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 122494 | 0.7 | 0.603052 |
Target: 5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3' miRNA: 3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 121913 | 0.7 | 0.603052 |
Target: 5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3' miRNA: 3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 141739 | 0.69 | 0.661669 |
Target: 5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3' miRNA: 3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 155599 | 0.69 | 0.661669 |
Target: 5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3' miRNA: 3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 134264 | 0.69 | 0.681439 |
Target: 5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3' miRNA: 3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 163064 | 0.69 | 0.681439 |
Target: 5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3' miRNA: 3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 69237 | 0.69 | 0.682424 |
Target: 5'- aGCCGGGAUauuG-CUAUCGC-GAGCGGu -3' miRNA: 3'- -CGGCCUUGgu-CgGGUAGCGuCUCGCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 31922 | 0.69 | 0.692252 |
Target: 5'- uGCCGGcuCCuacGCCCAUCGCGaAGUa- -3' miRNA: 3'- -CGGCCuuGGu--CGGGUAGCGUcUCGcc -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 126068 | 0.68 | 0.721416 |
Target: 5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3' miRNA: 3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5' |
|||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 91765 | 0.68 | 0.721416 |
Target: 5'- aCCGuAGCCAGCCgCAcggCGCgucuaAGGGCGGa -3' miRNA: 3'- cGGCcUUGGUCGG-GUa--GCG-----UCUCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home