miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 5' -58.4 NC_002577.1 + 1178 0.66 0.821052
Target:  5'- cGCCGGGAgaCGGCggcuUCAUCGCGcacGCGGg -3'
miRNA:   3'- -CGGCCUUg-GUCG----GGUAGCGUcu-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 2642 1.12 0.001227
Target:  5'- uGCCGGAACCAGCCCAUCGCAGAGCGGg -3'
miRNA:   3'- -CGGCCUUGGUCGGGUAGCGUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 7546 0.68 0.721416
Target:  5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3'
miRNA:   3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 8248 0.67 0.795383
Target:  5'- -aCGGAgagacccgcccGCCAGCCUcUCcggccCGGAGCGGa -3'
miRNA:   3'- cgGCCU-----------UGGUCGGGuAGc----GUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 9326 0.68 0.759249
Target:  5'- cGCUa-GGCUGGCCCGgggCGCGGAcGCGGu -3'
miRNA:   3'- -CGGccUUGGUCGGGUa--GCGUCU-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 9368 0.66 0.832544
Target:  5'- -gCGGAGCCGcGCCCGggacgCGUcguuucuugcgaaacGGGGUGGa -3'
miRNA:   3'- cgGCCUUGGU-CGGGUa----GCG---------------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 10102 0.66 0.860502
Target:  5'- cGCCGcGAcGCCgcGGCCCGUCcauGUGGuaauGCGGg -3'
miRNA:   3'- -CGGC-CU-UGG--UCGGGUAG---CGUCu---CGCC- -5'
9656 5' -58.4 NC_002577.1 + 11120 0.7 0.603052
Target:  5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3'
miRNA:   3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5'
9656 5' -58.4 NC_002577.1 + 11700 0.7 0.603052
Target:  5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3'
miRNA:   3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 16556 0.67 0.804089
Target:  5'- aGCCGGAGCCgaAGUCgGUCuGgAGAcCGGa -3'
miRNA:   3'- -CGGCCUUGG--UCGGgUAG-CgUCUcGCC- -5'
9656 5' -58.4 NC_002577.1 + 28034 0.67 0.812648
Target:  5'- aUCGGGA-CGGUCUAUCGCgAGAGCuuGGg -3'
miRNA:   3'- cGGCCUUgGUCGGGUAGCG-UCUCG--CC- -5'
9656 5' -58.4 NC_002577.1 + 31922 0.69 0.692252
Target:  5'- uGCCGGcuCCuacGCCCAUCGCGaAGUa- -3'
miRNA:   3'- -CGGCCuuGGu--CGGGUAGCGUcUCGcc -5'
9656 5' -58.4 NC_002577.1 + 38358 0.68 0.749929
Target:  5'- uGCCGGcGCCgaguucaauuGGCCUcuggCGCGG-GCGGa -3'
miRNA:   3'- -CGGCCuUGG----------UCGGGua--GCGUCuCGCC- -5'
9656 5' -58.4 NC_002577.1 + 43388 0.73 0.468903
Target:  5'- gGCCauguuCCAGCCCGUCGgGGAGCa- -3'
miRNA:   3'- -CGGccuu-GGUCGGGUAGCgUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 53377 0.73 0.433313
Target:  5'- aGCaCGGGuACU--CCCGUCGCAGAGUGGc -3'
miRNA:   3'- -CG-GCCU-UGGucGGGUAGCGUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 69237 0.69 0.682424
Target:  5'- aGCCGGGAUauuG-CUAUCGC-GAGCGGu -3'
miRNA:   3'- -CGGCCUUGgu-CgGGUAGCGuCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 91765 0.68 0.721416
Target:  5'- aCCGuAGCCAGCCgCAcggCGCgucuaAGGGCGGa -3'
miRNA:   3'- cGGCcUUGGUCGG-GUa--GCG-----UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 101240 0.72 0.534502
Target:  5'- uGCCGGAaucGCCAauCCCGUCGUAGaAGCa- -3'
miRNA:   3'- -CGGCCU---UGGUc-GGGUAGCGUC-UCGcc -5'
9656 5' -58.4 NC_002577.1 + 105952 0.73 0.442065
Target:  5'- cGCUGGGaagGCCGGCCCGUCGUguGGCcauGGg -3'
miRNA:   3'- -CGGCCU---UGGUCGGGUAGCGucUCG---CC- -5'
9656 5' -58.4 NC_002577.1 + 121913 0.7 0.603052
Target:  5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3'
miRNA:   3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.