miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 5' -58.4 NC_002577.1 + 2642 1.12 0.001227
Target:  5'- uGCCGGAACCAGCCCAUCGCAGAGCGGg -3'
miRNA:   3'- -CGGCCUUGGUCGGGUAGCGUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 134053 0.67 0.804089
Target:  5'- uCCGGGcgGCCuagcgagcGCCCG-CGCGGccGGCGGg -3'
miRNA:   3'- cGGCCU--UGGu-------CGGGUaGCGUC--UCGCC- -5'
9656 5' -58.4 NC_002577.1 + 140376 0.66 0.829294
Target:  5'- uCCGGGGaaagaGGCCUGUCGUGGAGaGGg -3'
miRNA:   3'- cGGCCUUgg---UCGGGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 123512 0.66 0.860502
Target:  5'- cGCCGcGAcGCCgcGGCCCGUCcauGUGGuaauGCGGg -3'
miRNA:   3'- -CGGC-CU-UGG--UCGGGUAG---CGUCu---CGCC- -5'
9656 5' -58.4 NC_002577.1 + 101240 0.72 0.534502
Target:  5'- uGCCGGAaucGCCAauCCCGUCGUAGaAGCa- -3'
miRNA:   3'- -CGGCCU---UGGUc-GGGUAGCGUC-UCGcc -5'
9656 5' -58.4 NC_002577.1 + 121913 0.7 0.603052
Target:  5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3'
miRNA:   3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 155599 0.69 0.661669
Target:  5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3'
miRNA:   3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 163064 0.69 0.681439
Target:  5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3'
miRNA:   3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5'
9656 5' -58.4 NC_002577.1 + 135867 0.68 0.749929
Target:  5'- aUCGGGgugGCCAGgCCAUCGgaCGGAGCa- -3'
miRNA:   3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 16556 0.67 0.804089
Target:  5'- aGCCGGAGCCgaAGUCgGUCuGgAGAcCGGa -3'
miRNA:   3'- -CGGCCUUGG--UCGGgUAG-CgUCUcGCC- -5'
9656 5' -58.4 NC_002577.1 + 136933 0.67 0.794505
Target:  5'- gGCCGGggUCguaacaaGGCUC--CGCGGAGCGc -3'
miRNA:   3'- -CGGCCuuGG-------UCGGGuaGCGUCUCGCc -5'
9656 5' -58.4 NC_002577.1 + 7546 0.68 0.721416
Target:  5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3'
miRNA:   3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 136789 0.73 0.433313
Target:  5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3'
miRNA:   3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 125366 0.67 0.795383
Target:  5'- -aCGGAgagacccgcccGCCAGCCUcUCcggccCGGAGCGGa -3'
miRNA:   3'- cgGCCU-----------UGGUCGGGuAGc----GUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 53377 0.73 0.433313
Target:  5'- aGCaCGGGuACU--CCCGUCGCAGAGUGGc -3'
miRNA:   3'- -CG-GCCU-UGGucGGGUAGCGUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 69237 0.69 0.682424
Target:  5'- aGCCGGGAUauuG-CUAUCGC-GAGCGGu -3'
miRNA:   3'- -CGGCCUUGgu-CgGGUAGCGuCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 161028 0.67 0.795383
Target:  5'- cGCCuGGGCgGGCCgGUgG-AGAGCGGc -3'
miRNA:   3'- -CGGcCUUGgUCGGgUAgCgUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 1178 0.66 0.821052
Target:  5'- cGCCGGGAgaCGGCggcuUCAUCGCGcacGCGGg -3'
miRNA:   3'- -CGGCCUUg-GUCG----GGUAGCGUcu-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 43388 0.73 0.468903
Target:  5'- gGCCauguuCCAGCCCGUCGgGGAGCa- -3'
miRNA:   3'- -CGGccuu-GGUCGGGUAGCgUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 122494 0.7 0.603052
Target:  5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3'
miRNA:   3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.