miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9762 3' -57.1 NC_002577.1 + 163228 0.66 0.853031
Target:  5'- gGGGAUGCaGCguGCGGCUcGGCcuacugGCCGCGc -3'
miRNA:   3'- -UCUUGCG-CGguUGCCGA-CUG------CGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 162442 0.7 0.668575
Target:  5'- cGAACGCGCCcGCgGGCUcgccGGCGCUucuGCGc -3'
miRNA:   3'- uCUUGCGCGGuUG-CCGA----CUGCGG---UGU- -5'
9762 3' -57.1 NC_002577.1 + 162144 0.68 0.788775
Target:  5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3'
miRNA:   3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 160869 1.09 0.002481
Target:  5'- gAGAACGCGCCAACGGCUGACGCCACAg -3'
miRNA:   3'- -UCUUGCGCGGUUGCCGACUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 160535 0.66 0.86818
Target:  5'- ----gGCGaUCGACGGCaucgUGGCGCCGCc -3'
miRNA:   3'- ucuugCGC-GGUUGCCG----ACUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 160380 0.66 0.867442
Target:  5'- cGGAGCGCGaCCGGCccucggacguuccGGaaGAgGCCGCGu -3'
miRNA:   3'- -UCUUGCGC-GGUUG-------------CCgaCUgCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 160127 0.69 0.708643
Target:  5'- gAGAAgGC-CCGACGGCUGcaacGCGUgGCGc -3'
miRNA:   3'- -UCUUgCGcGGUUGCCGAC----UGCGgUGU- -5'
9762 3' -57.1 NC_002577.1 + 159649 0.66 0.875444
Target:  5'- aGGGGCgucgcauuucgGCGCUGGCuGCaGACGCCAUAg -3'
miRNA:   3'- -UCUUG-----------CGCGGUUGcCGaCUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 158869 0.69 0.6987
Target:  5'- gAGGACgGCGCgGccGCGGCcggcgGGCGCCAUc -3'
miRNA:   3'- -UCUUG-CGCGgU--UGCCGa----CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 158591 0.67 0.828851
Target:  5'- ---uCGCGCCgGACGGCUGACGg---- -3'
miRNA:   3'- ucuuGCGCGG-UUGCCGACUGCggugu -5'
9762 3' -57.1 NC_002577.1 + 158362 0.66 0.853032
Target:  5'- -uGGCGCGCCGccgucaccgccGCGGCgcuACGCCGa- -3'
miRNA:   3'- ucUUGCGCGGU-----------UGCCGac-UGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 157994 0.71 0.628039
Target:  5'- gGGAGuaccCGCGcCCGGCGGC-GGCGCgCACGc -3'
miRNA:   3'- -UCUU----GCGC-GGUUGCCGaCUGCG-GUGU- -5'
9762 3' -57.1 NC_002577.1 + 157230 0.66 0.863721
Target:  5'- --cGCGCGCCAcaAcauagcguggcucccCGGCUGGCggGCCACc -3'
miRNA:   3'- ucuUGCGCGGU--U---------------GCCGACUG--CGGUGu -5'
9762 3' -57.1 NC_002577.1 + 156009 0.69 0.718522
Target:  5'- gGGAaacGCGCGCCGGuccaaccgUGGC-GACGCCgGCAg -3'
miRNA:   3'- -UCU---UGCGCGGUU--------GCCGaCUGCGG-UGU- -5'
9762 3' -57.1 NC_002577.1 + 155789 0.68 0.794186
Target:  5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3'
miRNA:   3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 155336 0.66 0.863721
Target:  5'- aGGAGCGCGUCGAgGGUuaaugucuccuuaccUcGGCGUCGCu -3'
miRNA:   3'- -UCUUGCGCGGUUgCCG---------------A-CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 154265 0.69 0.718523
Target:  5'- gAGAGCGCGUCucuGCgauguGGCUu-CGCCGCAa -3'
miRNA:   3'- -UCUUGCGCGGu--UG-----CCGAcuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 141548 0.68 0.794185
Target:  5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3'
miRNA:   3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 141329 0.69 0.718523
Target:  5'- gGGAaacGCGCGCCGGuccaaccgUGGC-GACGCCgGCAg -3'
miRNA:   3'- -UCU---UGCGCGGUU--------GCCGaCUGCGG-UGU- -5'
9762 3' -57.1 NC_002577.1 + 140108 0.66 0.863721
Target:  5'- --cGCGCGCCAcaAcauagcguggcucccCGGCUGGCggGCCACc -3'
miRNA:   3'- ucuUGCGCGGU--U---------------GCCGACUG--CGGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.