Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9762 | 3' | -57.1 | NC_002577.1 | + | 137211 | 0.69 | 0.708643 |
Target: 5'- gAGAAgGC-CCGACGGCUGcaacGCGUgGCGc -3' miRNA: 3'- -UCUUgCGcGGUUGCCGAC----UGCGgUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 158591 | 0.67 | 0.828851 |
Target: 5'- ---uCGCGCCgGACGGCUGACGg---- -3' miRNA: 3'- ucuuGCGCGG-UUGCCGACUGCggugu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 9171 | 0.67 | 0.811839 |
Target: 5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3' miRNA: 3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 141548 | 0.68 | 0.794185 |
Target: 5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3' miRNA: 3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 135184 | 0.68 | 0.788774 |
Target: 5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3' miRNA: 3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 125510 | 0.69 | 0.728329 |
Target: 5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3' miRNA: 3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 11249 | 0.69 | 0.718522 |
Target: 5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3' miRNA: 3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 156009 | 0.69 | 0.718522 |
Target: 5'- gGGAaacGCGCGCCGGuccaaccgUGGC-GACGCCgGCAg -3' miRNA: 3'- -UCU---UGCGCGGUU--------GCCGaCUGCGG-UGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 129034 | 0.69 | 0.718522 |
Target: 5'- cGGAGCGUGUaacgauuuccgCGGCGcGCgacGACGCCGCGc -3' miRNA: 3'- -UCUUGCGCG-----------GUUGC-CGa--CUGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 122013 | 0.67 | 0.837096 |
Target: 5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3' miRNA: 3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 91547 | 0.67 | 0.837096 |
Target: 5'- gAGAAUaaagGgGCUAcCGGUgGACGCCGCAc -3' miRNA: 3'- -UCUUG----CgCGGUuGCCGaCUGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 64122 | 0.67 | 0.837096 |
Target: 5'- aGGGAUGCGagGGCGGUUGGagugucgaugcUGCCGCGa -3' miRNA: 3'- -UCUUGCGCggUUGCCGACU-----------GCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 137384 | 0.66 | 0.881799 |
Target: 5'- cGGGgGCGCCAggagcgaacucucGCGGCUaAUGCgGCGg -3' miRNA: 3'- uCUUgCGCGGU-------------UGCCGAcUGCGgUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 159649 | 0.66 | 0.875444 |
Target: 5'- aGGGGCgucgcauuucgGCGCUGGCuGCaGACGCCAUAg -3' miRNA: 3'- -UCUUG-----------CGCGGUUGcCGaCUGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 136803 | 0.66 | 0.86818 |
Target: 5'- ----gGCGaUCGACGGCaucgUGGCGCCGCc -3' miRNA: 3'- ucuugCGC-GGUUGCCG----ACUGCGGUGu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 160380 | 0.66 | 0.867442 |
Target: 5'- cGGAGCGCGaCCGGCccucggacguuccGGaaGAgGCCGCGu -3' miRNA: 3'- -UCUUGCGC-GGUUG-------------CCgaCUgCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 157230 | 0.66 | 0.863721 |
Target: 5'- --cGCGCGCCAcaAcauagcguggcucccCGGCUGGCggGCCACc -3' miRNA: 3'- ucuUGCGCGGU--U---------------GCCGACUG--CGGUGu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 10979 | 0.66 | 0.853031 |
Target: 5'- gAGAACGuCGUCuACGGCUcGCGuUCGCGg -3' miRNA: 3'- -UCUUGC-GCGGuUGCCGAcUGC-GGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 138976 | 0.66 | 0.853031 |
Target: 5'- -uGGCGCGCCGccgucaccgccGCGGCgcuACGCCGa- -3' miRNA: 3'- ucUUGCGCGGU-----------UGCCGac-UGCGGUgu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 163228 | 0.66 | 0.853031 |
Target: 5'- gGGGAUGCaGCguGCGGCUcGGCcuacugGCCGCGc -3' miRNA: 3'- -UCUUGCG-CGguUGCCGA-CUG------CGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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