miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9769 5' -59.7 NC_002577.1 + 121858 0.66 0.783358
Target:  5'- cGCCgGAgGGCGCggACC-GG-GCGCGg -3'
miRNA:   3'- -UGGgCUgUCGUGgaUGGuCCuCGCGC- -5'
9769 5' -59.7 NC_002577.1 + 130577 0.66 0.783358
Target:  5'- cGCUCcGCAGCGCCUucgucCCGGaguaGAGCGCc -3'
miRNA:   3'- -UGGGcUGUCGUGGAu----GGUC----CUCGCGc -5'
9769 5' -59.7 NC_002577.1 + 155319 0.66 0.783358
Target:  5'- -aCCGcACAGuCGCUcg-CAGGAGCGCGu -3'
miRNA:   3'- ugGGC-UGUC-GUGGaugGUCCUCGCGC- -5'
9769 5' -59.7 NC_002577.1 + 3036 0.66 0.783358
Target:  5'- cGCUCcGCAGCGCCUucgucCCGGaguaGAGCGCc -3'
miRNA:   3'- -UGGGcUGUCGUGGAu----GGUC----CUCGCGc -5'
9769 5' -59.7 NC_002577.1 + 11756 0.66 0.783358
Target:  5'- cGCCgGAgGGCGCggACC-GG-GCGCGg -3'
miRNA:   3'- -UGGgCUgUCGUGgaUGGuCCuCGCGC- -5'
9769 5' -59.7 NC_002577.1 + 103745 0.66 0.774324
Target:  5'- uGCCUGGggagauuggaauCAGCuuCUuauggUACCGGGGGCGCGc -3'
miRNA:   3'- -UGGGCU------------GUCGu-GG-----AUGGUCCUCGCGC- -5'
9769 5' -59.7 NC_002577.1 + 139544 0.66 0.774324
Target:  5'- uUCCGGCGugcGCGCCgccGCCGGGcGCGgGu -3'
miRNA:   3'- uGGGCUGU---CGUGGa--UGGUCCuCGCgC- -5'
9769 5' -59.7 NC_002577.1 + 157793 0.66 0.774324
Target:  5'- uUCCGGCGugcGCGCCgccGCCGGGcGCGgGu -3'
miRNA:   3'- uGGGCUGU---CGUGGa--UGGUCCuCGCgC- -5'
9769 5' -59.7 NC_002577.1 + 160994 0.66 0.765171
Target:  5'- cACUCGcCAaccGCcucuGCCUACCGGaGAGCGCc -3'
miRNA:   3'- -UGGGCuGU---CG----UGGAUGGUC-CUCGCGc -5'
9769 5' -59.7 NC_002577.1 + 44545 0.66 0.746536
Target:  5'- aACCCGACgAGgaGCCUcCCcuGGGCGCa -3'
miRNA:   3'- -UGGGCUG-UCg-UGGAuGGucCUCGCGc -5'
9769 5' -59.7 NC_002577.1 + 135000 0.67 0.737071
Target:  5'- gACCgcgcggCGACAGCGCCUagaagacccgugGCCuguacgaggaggAGGAGCgGCGg -3'
miRNA:   3'- -UGG------GCUGUCGUGGA------------UGG------------UCCUCG-CGC- -5'
9769 5' -59.7 NC_002577.1 + 8237 0.67 0.737071
Target:  5'- cGCCCGcCAGCcucuCCgGCCcGGAGCGg- -3'
miRNA:   3'- -UGGGCuGUCGu---GGaUGGuCCUCGCgc -5'
9769 5' -59.7 NC_002577.1 + 162328 0.67 0.737071
Target:  5'- gACCgcgcggCGACAGCGCCUagaagacccgugGCCuguacgaggaggAGGAGCgGCGg -3'
miRNA:   3'- -UGG------GCUGUCGUGGA------------UGG------------UCCUCG-CGC- -5'
9769 5' -59.7 NC_002577.1 + 125377 0.67 0.737071
Target:  5'- cGCCCGcCAGCcucuCCgGCCcGGAGCGg- -3'
miRNA:   3'- -UGGGCuGUCGu---GGaUGGuCCUCGCgc -5'
9769 5' -59.7 NC_002577.1 + 42401 0.67 0.72752
Target:  5'- uCCCaaaacuACAGCACUcauucgACCGGGuAGCGCGc -3'
miRNA:   3'- uGGGc-----UGUCGUGGa-----UGGUCC-UCGCGC- -5'
9769 5' -59.7 NC_002577.1 + 157269 0.67 0.717892
Target:  5'- uACUCGACAGCGaCUACCGgccguucgaauGGcguuGCGCGa -3'
miRNA:   3'- -UGGGCUGUCGUgGAUGGU-----------CCu---CGCGC- -5'
9769 5' -59.7 NC_002577.1 + 140069 0.67 0.717892
Target:  5'- uACUCGACAGCGaCUACCGgccguucgaauGGcguuGCGCGa -3'
miRNA:   3'- -UGGGCUGUCGUgGAUGGU-----------CCu---CGCGC- -5'
9769 5' -59.7 NC_002577.1 + 114659 0.67 0.717892
Target:  5'- cGCCCGaACAGgGCa-AUCuGGAGCGCu -3'
miRNA:   3'- -UGGGC-UGUCgUGgaUGGuCCUCGCGc -5'
9769 5' -59.7 NC_002577.1 + 136334 0.67 0.698435
Target:  5'- -aCCG-CcuCGCCUACCGGaGAGCGCc -3'
miRNA:   3'- ugGGCuGucGUGGAUGGUC-CUCGCGc -5'
9769 5' -59.7 NC_002577.1 + 121591 0.68 0.629099
Target:  5'- cGCUCGGC-GCGCCggAgCAGGcGCGCGu -3'
miRNA:   3'- -UGGGCUGuCGUGGa-UgGUCCuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.